View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_2D_low_5 (Length: 236)

Name: NF0200_2D_low_5
Description: NF0200_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_2D_low_5
NF0200_2D_low_5
[»] chr7 (12 HSPs)
chr7 (6-219)||(36217286-36217499)
chr7 (36-219)||(36226083-36226266)
chr7 (69-219)||(36221334-36221484)
chr7 (138-219)||(35939529-35939610)
chr7 (156-219)||(35982210-35982273)
chr7 (156-219)||(36003622-36003685)
chr7 (166-219)||(35955236-35955289)
chr7 (60-181)||(35973540-35973661)
chr7 (60-181)||(35994952-35995073)
chr7 (173-216)||(35977645-35977688)
chr7 (173-216)||(35999057-35999100)
chr7 (173-219)||(35946982-35947028)
[»] chr1 (1 HSPs)
chr1 (80-217)||(18125897-18126034)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 36217286 - 36217499
Alignment:
Q  6 ttgtgagaattcatgttgagcccggaatttctgtgcacaatagagaaatcacctattcccatattgatgtttcaagtgttataggaagggagaatgacaa 105  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217286 ttgtgagaattcatgttgagcccggactttctgtgcacaatagagaaatcacctattcccatattgatgtttcaagtgttataggaagggagaatgacaa 36217385  T
Q  106 ggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatggtcatagaagtttatgtgttattcccatagtgggaattggaggattg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217386 ggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatggtcatagaagtttatgtgttattcccatagtgggaattggaggattg 36217485  T
Q  206 gggaagaccacact 219  Q
    ||||||||||||||    
T  36217486 gggaagaccacact 36217499  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 36226266 - 36226083
Alignment:
Q  36 ctgtgcacaatagagaaatcacctattcccatattgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattc 135  Q
    ||||||| || |||||||| ||  |||||||  |||||| ||||  ||| ||||||||||||||||| | | | |  |||||| ||||||||||| |  |    
T  36226266 ctgtgcagaagagagaaatgactcattcccacgttgatgcttcagatgtgataggaagggagaatgagaggaatgatattatcaagcttttgatgcagcc 36226167  T
Q  136 cgatcctcaaggttatggaaatggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacact 219  Q
      ||||||||||| |||   ||||| ||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||    
T  36226166 acatcctcaaggtgatgctgatggtgataaaagtttgtgtgttattcccatagtgggaattggtggcttggggaagaccacact 36226083  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 36221334 - 36221484
Alignment:
Q  69 ttgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatggtcatagaag 168  Q
    |||||| |||||||||||| || ||||||||||||| ||||| ||||||| | ||||||||| |  |  ||||||| ||  ||||| ||||| | | ||     
T  36221334 ttgatgcttcaagtgttattgggagggagaatgacagggaagaaattatcaaacttttgatgcaaccgcatcctcatggagatggagatggtgacaaaaa 36221433  T
Q  169 tttatgtgttattcccatagtgggaattggaggattggggaagaccacact 219  Q
    ||| ||||||||||||||||| |||||||| || |||||||||||||||||    
T  36221434 tttgtgtgttattcccatagttggaattggtggcttggggaagaccacact 36221484  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 35939610 - 35939529
Alignment:
Q  138 atcctcaaggttatggaaatggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacact 219  Q
    ||||||| ||| ||||  ||||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  35939610 atcctcacggtgatggtgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacact 35939529  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 35982273 - 35982210
Alignment:
Q  156 atggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacact 219  Q
    ||||| ||| ||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  35982273 atggtgataaaagcttatgtgttattcccattgtgggaattggaggtttgggaaagactacact 35982210  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 36003685 - 36003622
Alignment:
Q  156 atggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacact 219  Q
    ||||| ||| ||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  36003685 atggtgataaaagcttatgtgttattcccattgtgggaattggaggtttgggaaagactacact 36003622  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 35955289 - 35955236
Alignment:
Q  166 aagtttatgtgttattcccatagtgggaattggaggattggggaagaccacact 219  Q
    |||||| ||||||||||||||| | || |||||||||||||| |||||||||||    
T  35955289 aagtttgtgtgttattcccataataggtattggaggattgggaaagaccacact 35955236  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 35973661 - 35973540
Alignment:
Q  60 attcccatattgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatgg 159  Q
    |||||||| | |||| |||||||||||| || ||||||||||| | ||||| ||||||| ||||| ||||| |  |   |||||||||| ||||| | ||    
T  35973661 attcccatgtcgatgcttcaagtgttattgggagggagaatgatagggaagaaattatcaagcttctgatgcaaccacgtcctcaaggtgatggagacgg 35973562  T
Q  160 tcatagaagtttatgtgttatt 181  Q
    | ||| |||||| |||||||||    
T  35973561 tgataaaagtttgtgtgttatt 35973540  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 35995073 - 35994952
Alignment:
Q  60 attcccatattgatgtttcaagtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatgg 159  Q
    |||||||| | |||| |||||||||||| || ||||||||||| | ||||| ||||||| ||||| ||||| |  |   |||||||||| ||||| | ||    
T  35995073 attcccatgtcgatgcttcaagtgttattgggagggagaatgatagggaagaaattatcaagcttctgatgcaaccacgtcctcaaggtgatggagacgg 35994974  T
Q  160 tcatagaagtttatgtgttatt 181  Q
    | ||| |||||| |||||||||    
T  35994973 tgataaaagtttgtgtgttatt 35994952  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 35977688 - 35977645
Alignment:
Q  173 tgtgttattcccatagtgggaattggaggattggggaagaccac 216  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||    
T  35977688 tgtgtcattccaatagtgggaattggaggtttggggaagaccac 35977645  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 35999100 - 35999057
Alignment:
Q  173 tgtgttattcccatagtgggaattggaggattggggaagaccac 216  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||    
T  35999100 tgtgtcattccaatagtgggaattggaggtttggggaagaccac 35999057  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 35947028 - 35946982
Alignment:
Q  173 tgtgttattcccatagtgggaattggaggattggggaagaccacact 219  Q
    ||||| ||||| ||||||||||||||||| ||| |||||||||||||    
T  35947028 tgtgtcattccaatagtgggaattggaggtttgtggaagaccacact 35946982  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 18126034 - 18125897
Alignment:
Q  80 agtgttataggaagggagaatgacaaggaagcaattatcgagcttttgatggattccgatcctcaaggttatggaaatggtcatagaagtttatgtgtta 179  Q
    ||||| |||||||| |||| ||| | |||||  |||||| ||||||||||| |  |  ||||||| ||| ||||  ||||| ||| |||| ||| |||||    
T  18126034 agtgtaataggaagagagagtgatagggaagagattatcaagcttttgatgcaagcacatcctcatggtgatggtgatggtgataaaagtctatctgtta 18125935  T
Q  180 ttcccatagtgggaattggaggattggggaagaccaca 217  Q
    ||||||| ||||||||||| || |||||||||||||||    
T  18125934 ttcccatggtgggaattggtggcttggggaagaccaca 18125897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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