View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200_low_1 (Length: 445)
Name: NF0200_low_1
Description: NF0200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_low_1 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 42883 - 42533
Alignment:
| Q |
7 |
ggagcagagataatctactgtaaattcctttctttaatcaaaagttaattcatagttctgaagtttggtttgtcaactttgccaaatttggtcattaatt |
106 |
Q |
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| T |
42883 |
ggagcagtgataatctactgtaaattcctttctttaatcaaaagttaattcatagttctgaagtttggtttgtcaactttgccaaatttggtcattaatt |
42784 |
T |
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| Q |
107 |
aagatggaacattaatatttgtaaatgatactgttaaaaacttagcagtgatcagtctattgtagttttcatgttctgatgaagtagtaagaatggtgtc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42783 |
aagatggaacattaatatttgtaaatgatactgttaaaaacttagcagtgatcagtctattgtagttttcatgttctgatgaagtagtaagaatggtgtc |
42684 |
T |
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| Q |
207 |
agagagctagtccttttggttgataaataattagcatagctatagcatcatctgtcatattcatccctgtgaagttaaatttgaccagttatgtagtaca |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42683 |
agagagctagtccttttggttgataaataattagcatagctatagtatcatctgtcatattcatccctgtgaagttaaatttgaccagctatgtagtaca |
42584 |
T |
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| Q |
307 |
tgaagaatcgtgactagcaagtaaatgttaacttcacataatcccaggcgc |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42583 |
tgaagaatcgtgactagcaagtaaatgttaacttcacataatcccaggcgc |
42533 |
T |
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