View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200_low_2 (Length: 440)
Name: NF0200_low_2
Description: NF0200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 97 - 440
Target Start/End: Complemental strand, 54497979 - 54497633
Alignment:
| Q |
97 |
gattttactctttgtagaattgtatgataaatgccacacagaaggattcggaaccttcaggttttgtgactgctcaacgtagggaaaatgattctgatac |
196 |
Q |
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| T |
54497979 |
gattttactctttgtagaattgtatgataaatgccacacagaaggattcggaaccttcaggttttgtgactgctcaacgtagggaaaatgattctgatac |
54497880 |
T |
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| Q |
197 |
aagtgattctgctcaacgttgggaacgtgtcttttggatgnnnnnnnn---cctaaataactcagaagtaaatgaatattctttatcatctttcataaat |
293 |
Q |
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| T |
54497879 |
aagtgattctgctcaacgtagggaacgtgtctcttggatgaaaaaaaaaaacctaaataactcagaagtaaatgaatattctttatcatctttcataaat |
54497780 |
T |
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| Q |
294 |
aaggatggatggcttactaacataccacctatatatcctcgtaaacttcttgttgtagtgtgtcctttaattttctt----atagttgttttagttgatt |
389 |
Q |
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| T |
54497779 |
aagaatggatggcttaccaacatac----tatatatcctcgtaaacttcttgttgtagtgtgtcctttaattttctttcttatagttgttttagttgatt |
54497684 |
T |
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| Q |
390 |
tacgtacctagtaggctaatatgtaacatgctgctgctactttagcaatct |
440 |
Q |
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| T |
54497683 |
tacgtacctagtaggctaatatgtaacatgctgctgctactttagcaatct |
54497633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 18745523 - 18745576
Alignment:
| Q |
267 |
gaatattctttatcatctttcataaataaggatggatggcttactaacatacca |
320 |
Q |
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| T |
18745523 |
gaatattctttatcatctttcataaataaagatggatggcttgctcacatacca |
18745576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 38292660 - 38292596
Alignment:
| Q |
262 |
taaatgaatattctttatcatctttcataaataaggatggatggcttactaacataccacctata |
326 |
Q |
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| T |
38292660 |
taaatgattattctttatcatctttcataaatgaagatagatggctttccaacataccacctata |
38292596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 38304452 - 38304405
Alignment:
| Q |
262 |
taaatgaatattctttatcatctttcataaataaggatggatggctta |
309 |
Q |
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| T |
38304452 |
taaatgattattctttatcatctttcataaatgaagatggatggctta |
38304405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 41039348 - 41039287
Alignment:
| Q |
264 |
aatgaatattctttatcatctttcataaataaggatggatggcttactaacataccacctat |
325 |
Q |
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||||||||| |||| ||||||||||||||||| |||||||||||| | ||| ||||| |||| |
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| T |
41039348 |
aatgaatatactttgtcatctttcataaataatgatggatggcttgccaacgtaccatctat |
41039287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 38300242 - 38300178
Alignment:
| Q |
262 |
taaatgaatattctttatcatctttcataaataaggatggatggcttactaacataccacctata |
326 |
Q |
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||||||| |||||||||||||||||||||||| | ||| ||||||||| || |||||| ||||| |
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| T |
38300242 |
taaatgattattctttatcatctttcataaatgaagatagatggcttaacaatataccaactata |
38300178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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