View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200_low_4 (Length: 250)
Name: NF0200_low_4
Description: NF0200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 12958924 - 12958714
Alignment:
| Q |
1 |
cccgatttgcaacttcagtttcgcccgcgaaaacaacaaaacttgtggctcgatggctgacatagcaaagaaatcccaattttatatattaaactttttg |
100 |
Q |
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| T |
12958924 |
cccgatttgcaactccattttcgcccgcgaaaacaacaaaacttgtggcttgatggcttacatagcaaagaaatcccaattttatatattaaactttttg |
12958825 |
T |
|
| Q |
101 |
gctgtgtgtattgactttaaacgatgtgggacttcttcagcctctaccacattttacaactccaacccctttgtccttctcttt-aagaat-gatcacac |
198 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
12958824 |
gctgtgtgtattgactttaaacgatgtgggactttttcagcctctaccacattttacaactccaacccctttgtccttctctttaaagaatggatcacac |
12958725 |
T |
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| Q |
199 |
cattgcctcac |
209 |
Q |
| |
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||||||||||| |
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| T |
12958724 |
cattgcctcac |
12958714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 13866813 - 13866960
Alignment:
| Q |
40 |
aacttgtggctcgatggctgacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaacgatgtgggacttcttca |
139 |
Q |
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| T |
13866813 |
aacttgaggcttgatgccttacaaagtaaagaaaatccaattttatat--tgaactttctggctgtgtgttctgactttaaaggatgtgggacttcttca |
13866910 |
T |
|
| Q |
140 |
gcctctaccacattttacaactccaacccctttgtccttctctttaagaa |
189 |
Q |
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| T |
13866911 |
gcctctaccagtttttacaactccaacctctttgtccttctctttaagaa |
13866960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 13865043 - 13865151
Alignment:
| Q |
14 |
ttcagtttcgcccgcgaaaacaacaaaacttgtggctcgatggct---gacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgta |
110 |
Q |
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|||| |||| |||| |||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||| || || |
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| T |
13865043 |
ttcactttcacccgtgaaaacaataaaacttgtggcttgatggcttactacatagcaaagaattcccaattt--tatattaaactttttggctgcgttta |
13865140 |
T |
|
| Q |
111 |
ttgactttaaa |
121 |
Q |
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|||| |||||| |
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| T |
13865141 |
ttgaatttaaa |
13865151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 13865154 - 13865209
Alignment:
| Q |
191 |
gatcacaccattgcctcacaatgttatgcttatcttatatttatttcatctcactc |
246 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
13865154 |
gatcaaaccattgcttcacaatgttatgcttatcttatatttatttcatttcactc |
13865209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 48708624 - 48708578
Alignment:
| Q |
92 |
aactttttggctgtgtgtattgactttaaacgatgtgggacttcttc |
138 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
48708624 |
aactttctggctgtgtgtattgactttaaacgatgttggacttcttc |
48708578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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