View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_low_5 (Length: 250)

Name: NF0200_low_5
Description: NF0200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_low_5
NF0200_low_5
[»] chr6 (3 HSPs)
chr6 (41-222)||(35108441-35108622)
chr6 (166-220)||(7723678-7723732)
chr6 (166-220)||(35108281-35108335)
[»] chr8 (2 HSPs)
chr8 (166-220)||(41130757-41130810)
chr8 (166-214)||(24190789-24190837)
[»] chr4 (2 HSPs)
chr4 (165-220)||(42451821-42451876)
chr4 (166-213)||(4710282-4710329)
[»] chr5 (2 HSPs)
chr5 (166-220)||(5655255-5655309)
chr5 (161-220)||(5655426-5655485)
[»] chr3 (2 HSPs)
chr3 (164-220)||(32464862-32464918)
chr3 (165-220)||(42448765-42448820)
[»] chr7 (2 HSPs)
chr7 (166-220)||(36645040-36645094)
chr7 (165-214)||(15328984-15329033)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 35108622 - 35108441
Alignment:
Q  41 gattgatctgaaaatgttagatatggaagcgctgcacactcaatgcaagagaattagggttatatatagaattcttttttgggttattcattctttggcc 140  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  35108622 gattgatctgaaaatgttagatatggaggcgctgcacactcaatgcaagagaattagagttatatatagagttcttttttgggttactcattctttggcc 35108523  T
Q  141 caaactttattcagttcaaaatctagaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaaat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35108522 caaactttattcagttcaaaatctagaattatgctcttctaccgtaaaaaattgatcgttcccaaccaaacttccgaaaaat 35108441  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 7723678 - 7723732
Alignment:
Q  166 gaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaa 220  Q
    ||||| ||||||||| | || |||||||| ||||||||||||||||||| |||||    
T  7723678 gaattctgctcttctcctatcaaaaattgctcgttcccaaccaaacttctgaaaa 7723732  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 35108281 - 35108335
Alignment:
Q  166 gaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaa 220  Q
    ||||||||||||||| |||| |||||||| ||| | ||||||||||||| |||||    
T  35108281 gaattatgctcttcttccatcaaaaattgctcgcttccaaccaaacttctgaaaa 35108335  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 41130810 - 41130757
Alignment:
Q  166 gaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaa 220  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  41130810 gaattatgctcttctcccataaaaaattgttcgttcccaa-caaacttccgaaaa 41130757  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 24190789 - 24190837
Alignment:
Q  166 gaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttc 214  Q
    ||||| ||||||||| ||||||||||||| | | |||||||||||||||    
T  24190789 gaattctgctcttctcccataaaaaattgcttgctcccaaccaaacttc 24190837  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 42451821 - 42451876
Alignment:
Q  165 agaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaa 220  Q
    |||||||||||||||| ||||||||||||| | | |||||||||||||| ||||||    
T  42451821 agaattatgctcttctcccataaaaaattgcttgctcccaaccaaactttcgaaaa 42451876  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 4710282 - 4710329
Alignment:
Q  166 gaattatgctcttctaccataaaaaattgatcgttcccaaccaaactt 213  Q
    ||||| ||||||||| ||||||||||||| ||| ||||||||||||||    
T  4710282 gaattctgctcttctcccataaaaaattgctcgctcccaaccaaactt 4710329  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 5655255 - 5655309
Alignment:
Q  166 gaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaa 220  Q
    ||||| ||||||||| ||||||||||||| ||| | |||||||||||||||||||    
T  5655255 gaattctgctcttctcccataaaaaattgttcgcttccaaccaaacttccgaaaa 5655309  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 5655485 - 5655426
Alignment:
Q  161 atctagaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaa 220  Q
    |||| ||||||||||||||| ||||||||||||  ||| || ||| ||||||||||||||    
T  5655485 atcttgaattatgctcttctcccataaaaaattactcgctctcaatcaaacttccgaaaa 5655426  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 32464862 - 32464918
Alignment:
Q  164 tagaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaa 220  Q
    |||||||||||||||||  |||||||||||| ||| |||||| ||||||||| ||||    
T  32464862 tagaattatgctcttctttcataaaaaattgttcgctcccaatcaaacttccaaaaa 32464918  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 42448820 - 42448765
Alignment:
Q  165 agaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaa 220  Q
    |||||| ||||| ||| ||||||||||||| ||| |||||||||||||||| ||||    
T  42448820 agaattctgctcgtctcccataaaaaattgctcgctcccaaccaaacttccaaaaa 42448765  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 36645040 - 36645094
Alignment:
Q  166 gaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttccgaaaa 220  Q
    ||||| |||||||||  |||||||||||| ||| ||||||| |||||||||||||    
T  36645040 gaattctgctcttctctcataaaaaattgctcgctcccaacgaaacttccgaaaa 36645094  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 15329033 - 15328984
Alignment:
Q  165 agaattatgctcttctaccataaaaaattgatcgttcccaaccaaacttc 214  Q
    |||||||||||||||| ||||||||||||| ||  ||||| |||||||||    
T  15329033 agaattatgctcttctcccataaaaaattgttcactcccatccaaacttc 15328984  T

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