View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0201_high_1 (Length: 545)
Name: NF0201_high_1
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 6753152 - 6752627
Alignment:
| Q |
1 |
ctagagctatagtgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753152 |
ctagagctatagtgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacg |
6753053 |
T |
|
| Q |
101 |
agcttcagaaattgcacaatcctcatagcctaggttacaccagaaatttttaactatagcaaactgacagtgcgtctccataagaacaacaagtaaaggt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6753052 |
agcttcagaaattgcacaatcctcatagcctaggttacaccagaaatttttaactctagaaaactgacagtgcgtctccataagaacaacaagtaaaggt |
6752953 |
T |
|
| Q |
201 |
ttatatcttttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaagaatagataaatcattaaaactagtc |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6752952 |
ttatatcttttaataaggactcgggttcgtctcttaccctccttattaacggcaccccttat-attccaactaagaatagataaatcattaaaactagtc |
6752854 |
T |
|
| Q |
301 |
ataagtaccttagtgaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacatttgcactagccttggaaccatcatta |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
6752853 |
ataagtaccttagtgaaataaaggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttgacatttgcactagccttggaaccatcctta |
6752754 |
T |
|
| Q |
401 |
tttatgtggacaccacttgtattattaatttcatgcttattacacatgttggatcctttgcttatttcttccgtagccattacatgtgtatcttgctcca |
500 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6752753 |
tttatgtggacaccacttgtattattaatttcatgcttattacacatgttggatcctttgcttatttcttccgtagccattacatgtgtatcttggtcca |
6752654 |
T |
|
| Q |
501 |
atatttcataccttccttcttccacat |
527 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
6752653 |
atatttcataccttccttcttccacat |
6752627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 1811382 - 1811761
Alignment:
| Q |
1 |
ctagagctatagtgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1811382 |
ctagagctatagtgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatacctccagagtgtccacg |
1811481 |
T |
|
| Q |
101 |
agcttcagaaattgcacaatcctcatagcctaggttacaccagaaatttttaactatagcaaactgacagtgcgtctccataagaacaacaagtaaaggt |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1811482 |
agcttcagaaattgcacaattctcatagcctaggttacaccagaaatttttaactctagaaaactgagagtgcgtctccataagaacaacaagtaaaggt |
1811581 |
T |
|
| Q |
201 |
ttatatcttttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaagaatagataaatcattaaaactagtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
1811582 |
ttatatcttttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttat-attccaactaagaatagataaatcattaaaactagtc |
1811680 |
T |
|
| Q |
301 |
ataagtaccttagtgaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacatttgcact |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
1811681 |
ataagtaccttagtgaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggaattaacatttgcact |
1811761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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