View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0201_high_16 (Length: 210)
Name: NF0201_high_16
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 35979832 - 35980023
Alignment:
| Q |
1 |
aaagctgctagtgttcatttctgtggagacaaagcttactatgaagacaatgatgaatatccttgaacctgatttattattatatagac-attcatattt |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
35979832 |
aaagctgctagtgttcatttctgtggatacaaagcttactatgaagacaatgatgaatatccttgaacctgatttattattatatagtctattcatattt |
35979931 |
T |
|
| Q |
100 |
ttagatatttttctaagatagtttgttagtgtatttgctgctctgttattaaaagcatattagcccagattagtctatatgtcatcctagtc |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35979932 |
ttagatatttttctaagatagtttgttagtgtatttgctgctctgttattaaaagcatattagcccagattagtctatttgtcatcctagtc |
35980023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 1395022 - 1395184
Alignment:
| Q |
2 |
aagctgctagtgttcatttctgtggagacaaagcttactatgaagacaatgatga---atatccttgaacctgatttattattatatagac-attcatat |
97 |
Q |
| |
|
||||||| || |||||||| |||||| |||||||||| || ||||| |||||||| |||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
1395022 |
aagctgcaagagttcatttatgtggatacaaagcttattaagaagagaatgatgatgaatatccttcaacctgatttattattatatagtttattcatat |
1395121 |
T |
|
| Q |
98 |
ttttag---atatttttctaagatagtttgttagtgtatttgctgctctgttattaaaagcat |
157 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||| || |||||||| ||| |||| |
|
|
| T |
1395122 |
ttttagttgatatttttctaaggtagtttgttagtgtatttggtgatctgttatcaaatgcat |
1395184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2591 times since January 2019
Visitors: 2402