View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0201_high_2 (Length: 450)
Name: NF0201_high_2
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 7686138 - 7685744
Alignment:
| Q |
16 |
atcactcatcagtctaagaaaggttgaaaaaatccaattcatcaaatccataaaagacgttggagcattaataattcttaaaggtataatcagaatttta |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||||||| |
|
|
| T |
7686138 |
atcacccatcagtctaagaaaggttgaaaaaatccaattcatcaaatccataaaagacgttggagcattagtaagtcctaaaggtataaccagaatttta |
7686039 |
T |
|
| Q |
116 |
caatgctcgtagcaggtgcaaaaagctgtctttgatatatgttccctcttacatcttaatctagtgatacccataccttaaatcaattttagaaaaacac |
215 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||| |||||||||||||||| |
|
|
| T |
7686038 |
caatgcttgtagcaggtgcaaaaagttgtctttgatatatgttccctcttgcatcttcatcttgtgatacccatac--------aattttagaaaaacac |
7685947 |
T |
|
| Q |
216 |
ttaagttcttgaagttgatcaaacaactcagcaatgttgtaaatgatatttattctttactaccaccttgttcaatcacctatacactacgcagtcacat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
7685946 |
ttaagttcttgaagttgatcaaacaactcagcaatgttgtaaatgatatttattctttactaccatcttgttcaatcacctatacactacacagtcacat |
7685847 |
T |
|
| Q |
316 |
gaacccatccttctttttacaaacaataacagttcctcccaaggaaaagaatttaggcgaataaaactcttgttgaaaaatcttgtagttactccattaa |
415 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7685846 |
gaatccatccttctttttacaaacaataacagttcctcccaaggaaaagaatttaggcgaataaaactcttattgaaaaatcttgtagttactccattaa |
7685747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 14656521 - 14656389
Alignment:
| Q |
27 |
gtctaagaaaggttgaaaaaatccaattcatcaaatccataaaagacgttggagcattaataattcttaaaggtataatcagaattttacaatgctcgta |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14656521 |
gtctaagaaaggttgaaaaaatccaattcatcaaatccctaaaagacgttggagcattagtaagtcttaaaggtataaccagaattttacaatgctcgta |
14656422 |
T |
|
| Q |
127 |
gcaggtgcaaaaagctgtctttgatatatgttc |
159 |
Q |
| |
|
||| |||| ||||| |||||||||||||||||| |
|
|
| T |
14656421 |
gcatgtgcgaaaagttgtctttgatatatgttc |
14656389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 278 - 418
Target Start/End: Complemental strand, 27005298 - 27005152
Alignment:
| Q |
278 |
ccaccttgttcaatcacctatacactacgcagtcacatgaacccatc--cttcttt------ttacaaacaataacagttcctcccaaggaaaagaattt |
369 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
27005298 |
ccaccttattcaattgcctatacactacacagtcacatgaatccatcttcttctttctttttttacaaaaaataacagttcctcccaag-aaaagaattt |
27005200 |
T |
|
| Q |
370 |
aggcgaataaaactcttgttgaaaaatcttgtagttactccattaacac |
418 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
27005199 |
aggcgaacaaa-ctcttattgaaaaatcttgtagttactccatcaacac |
27005152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 9301848 - 9302046
Alignment:
| Q |
44 |
aaaatccaattcatcaaatccataaaagacgttggagcattaataattcttaaaggtataatcagaattttacaatgctcgtagcaggtgcaaaaagctg |
143 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||| ||| | ||||| |||| |||||||| | |||||||| |||| |||||||| | || |
|
|
| T |
9301848 |
aaaatccaactcatcaaatccataaaagatattagagcattagtaagcccaaaaggcataaccagaatttcataatgctcgcagcatgtgcaaaacgttg |
9301947 |
T |
|
| Q |
144 |
tctttgatatatgttccctcttacatcttaatctagtgatacccataccttaaatcaattttagaaaaacacttaagttcttgaagttgatcaaacaact |
243 |
Q |
| |
|
| || ||||| ||||||||| ||||| | || |||||||||| || || || || || |||||||||| | | ||||||||||||||||||||| |
|
|
| T |
9301948 |
acactggcatatgatccctctta-atcttcaactggtgatacccagactgcaattctatcttggaaaaacactaagctccttgaagttgatcaaacaact |
9302046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2304 times since January 2019
Visitors: 2400