View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0201_high_3 (Length: 432)
Name: NF0201_high_3
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 30 - 427
Target Start/End: Original strand, 10378797 - 10379194
Alignment:
| Q |
30 |
cgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagtacagtccgaaa |
129 |
Q |
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| T |
10378797 |
cgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagtacagtccgaaa |
10378896 |
T |
|
| Q |
130 |
tctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttgcaagaattggagttcctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378897 |
tctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttgcaagaattggagttcctt |
10378996 |
T |
|
| Q |
230 |
ccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgtttggtgctctcatacaacccttttctgatttagat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378997 |
ccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgtttggtgctctcatacaacccttttctgatttagat |
10379096 |
T |
|
| Q |
330 |
tatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcatagtatagatgctgacattctcaaaggaaggtccatgttctctgctgct |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10379097 |
tatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcatagtatagatgctgacattctcaaaggaaggtccatgttctctgttgct |
10379194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 95 - 258
Target Start/End: Original strand, 10367337 - 10367500
Alignment:
| Q |
95 |
ctacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaag |
194 |
Q |
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|||||| |||||||| ||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
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| T |
10367337 |
ctacacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
10367436 |
T |
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| Q |
195 |
aatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataa |
258 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
10367437 |
aatgttaggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 43657570 - 43657687
Alignment:
| Q |
112 |
ttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttg |
211 |
Q |
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|||||||| |||||||||||||||||||||| |||| ||||||||| |||||||| || || || ||| ||||||||| | |||| |||||||| || |
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| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtg |
43657669 |
T |
|
| Q |
212 |
caagaattggagttcctt |
229 |
Q |
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||| || ||||||||||| |
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|
| T |
43657670 |
caaaaaatggagttcctt |
43657687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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