View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0201_high_4 (Length: 418)
Name: NF0201_high_4
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 136 - 404
Target Start/End: Original strand, 35979754 - 35980023
Alignment:
| Q |
136 |
accctgaccaaggacaaaattcctcagatatctcttgatattgttcttgaaaaggaatttgagctatctcacaattccaaagctgctagtgttcatttct |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35979754 |
accctgaccaaggacaaaattcctcagatatctcttgatattgttcttgaaaaggaatttgagctatctcacaattccaaagctgctagtgttcatttct |
35979853 |
T |
|
| Q |
236 |
gtggatacaaagcttactatgaagacaatgatgaatatccttgaacctgatttattattatatagac-attcatatttttagatatttttctaagatagt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
35979854 |
gtggatacaaagcttactatgaagacaatgatgaatatccttgaacctgatttattattatatagtctattcatatttttagatatttttctaagatagt |
35979953 |
T |
|
| Q |
335 |
ttgttagtgtatttgctgctctgttattaaaagcatattagcccagattagtctatatgtcatcctagtc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35979954 |
ttgttagtgtatttgctgctctgttattaaaagcatattagcccagattagtctatttgtcatcctagtc |
35980023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 195 - 370
Target Start/End: Original strand, 1395002 - 1395184
Alignment:
| Q |
195 |
tgagctatctcacaattccaaagctgctagtgttcatttctgtggatacaaagcttactatgaagaca---atgatgaatatccttgaacctgatttatt |
291 |
Q |
| |
|
|||||| |||||||||||| ||||||| || |||||||| ||||||||||||||||| || ||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
1395002 |
tgagctttctcacaattcccaagctgcaagagttcatttatgtggatacaaagcttattaagaagagaatgatgatgaatatccttcaacctgatttatt |
1395101 |
T |
|
| Q |
292 |
attatatag-acattcatattttta---gatatttttctaagatagtttgttagtgtatttgctgctctgttattaaaagcat |
370 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||| ||| |||| |
|
|
| T |
1395102 |
attatatagtttattcatatttttagttgatatttttctaaggtagtttgttagtgtatttggtgatctgttatcaaatgcat |
1395184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 6086138 - 6086202
Alignment:
| Q |
187 |
aaggaatttgagctatctcacaattccaaagctgctagtgttcatttctgtggatacaaagctta |
251 |
Q |
| |
|
|||||||||||||| | |||||||| ||| |||||||| | ||||||| | ||||||||||||| |
|
|
| T |
6086138 |
aaggaatttgagctttgtcacaatttgaaaactgctagtatccatttctcttgatacaaagctta |
6086202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1937 times since January 2019
Visitors: 2394