View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0201_low_1 (Length: 769)

Name: NF0201_low_1
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0201_low_1
NF0201_low_1
[»] chr7 (1 HSPs)
chr7 (92-758)||(21395776-21396443)


Alignment Details
Target: chr7 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 92 - 758
Target Start/End: Original strand, 21395776 - 21396443
Alignment:
Q  92 tccttccatggtgcttaatgaatcaatcgccatgttctttgcatatgggatcatttaaatattgaatgcagaatattttatttgccagcttaaccacatg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21395776 tccttccatggtgcttaatgaatcaatcgccatgttctttgcatatgggatcatttaaatattgaatgcagaatattttatttgccagcttaaccacatg 21395875  T
Q  192 ctaatgttctgagatccgaccatttcggtcataataaatttcttgtctttattatttgattttccttatctgaaaattgcttttacaagtacaaacattt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21395876 ctaatgttctgagatccgaccatttcggtcataataaatttcttgtctttattatttgattttccttatctgaaaattgcttttacaagtacaaacattt 21395975  T
Q  292 ttatctttatgtgcctaaaatccaatcttcatgacttcaatcacgttattttgttttatgtatacttttttcccttgttattgatagatttagattgttt 391  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21395976 ttatctttacgtgcctaaaatccaatcttcatgacttcaatcacgttattttgttttatgtatacttttttcccttgttattgataaatttagattgttt 21396075  T
Q  392 tatgtatagtttgatttaaacttcttccctttcatttcttgtatagtggtcccctcttaaacacatgtcttggcggagatttggtgaaagttactttctc 491  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21396076 tatgtatagtttgatttaaacctcttccctttcatttcttgtatagtggtcccctcttaaacacatgtcttggcggagatttggtgaaagttactttctc 21396175  T
Q  492 ccatgtttctttggtttacgaaatttatacaataaattataattattgggtctttgtttattatcaccttttctaattttttaatatgagctaccctttc 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21396176 ccatgtttctttggtttacgaaatttatacaataaattataattattgggtctttgtttatcatcaccttttctaattttttaatatgagctaccctttc 21396275  T
Q  592 tactcaatctaagcttaattatggccaggggacacatttcagtattcagggtagttgtttttgcatgaacttcaagatcctcatgatgtttttagaatta 691  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21396276 tactcaatctaagcttaattatggctaggggacacatttcagtattcagggtagttgtttttgcatgaacttcaagatcctcatgatgtttttagaatta 21396375  T
Q  692 tgctagttatcccttgtttgtc-tttttatacctcccacatacatttctaattagactttaacttcat 758  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21396376 tgctagttatcccttgtttgtcttttttatacctcccacatacatttctaattagactttaacttcat 21396443  T

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