View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0201_low_10 (Length: 311)
Name: NF0201_low_10
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 43386271 - 43386188
Alignment:
| Q |
191 |
ataaaaggacaagtacactctatataaaatcatatcgtggcatgataaagtttgatatttaacgacataaaattgatttgttct |
274 |
Q |
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| T |
43386271 |
ataaaaggataagtacactctatataaaatcatatcgtggcatgataaagtttgatatttaacgacataaaattgatttattct |
43386188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 43386356 - 43386296
Alignment:
| Q |
1 |
ataaaaacgaagaactaggtatgctacctccctatacattaattagactttatcttatata |
61 |
Q |
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| T |
43386356 |
ataaaaacgaagaactaggtatgctacctccctatacactaattagactttatgttatata |
43386296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 43386298 - 43386266
Alignment:
| Q |
187 |
ataaataaaaggacaagtacactctatataaaa |
219 |
Q |
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| T |
43386298 |
ataaataaaaggataagtacactctatataaaa |
43386266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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