View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0201_low_16 (Length: 252)
Name: NF0201_low_16
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_low_16 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 13731193 - 13731424
Alignment:
| Q |
21 |
acatcatcatcatcccccacaaactctactacctctccaaattccactacaaattcctcttccaattttcattcacctataccttctgctggtcagaact |
120 |
Q |
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| T |
13731193 |
acatcatcatcatcccccacaaactctactacctctccaaattccactacaaattcctcttccaattttcattcacctataccttctgctggtcagaact |
13731292 |
T |
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| Q |
121 |
caccctctcctacttcttcctagcagtctcctattttgtcacctgcatctccaactccttctattccttcttacagccctactcatattttcaatcctac |
220 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
13731293 |
caccctctcctacttcttcccagcagtctcctattttgacacctgcatctccaactccttctattccttcttacaaccctgctcatattttcaatcctac |
13731392 |
T |
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| Q |
221 |
acctattaccatattgtccccttcaccatcac |
252 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
13731393 |
acctattaccatattgtccccttcaccatcac |
13731424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 25229467 - 25229252
Alignment:
| Q |
22 |
catcatcatcatcccccacaaactctactacctctccaaattccactacaaattcctcttccaattttcattcacctataccttctgctggtcagaactc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25229467 |
catcatcatcatcccccacaaactctactacctctccgcattcc------------tcttccaattttcattcacctatacct---gctggtcagaactc |
25229383 |
T |
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| Q |
122 |
accctctcctacttcttcctagcagtctcctattttgtcacctgcatctccaactccttctattccttcttacagccctactcatattttcaatcctaca |
221 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25229382 |
accctctcctacttcttcccagcagtctcctattttgacacatgcatctccaactccttctattccttcttacagacctactcatattttcaatcctaca |
25229283 |
T |
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| Q |
222 |
cctattaccatattgtccccttcaccatcac |
252 |
Q |
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||||||||||||||||||||||||| ||||| |
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| T |
25229282 |
cctattaccatattgtccccttcacaatcac |
25229252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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