View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0201_low_19 (Length: 251)
Name: NF0201_low_19
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_low_19 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 35348804 - 35348575
Alignment:
| Q |
22 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35348804 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
35348705 |
T |
|
| Q |
122 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagata |
221 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35348704 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagata |
35348605 |
T |
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| Q |
222 |
tattcatcaattcattactgcaagttcaat |
251 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35348604 |
tattcatcaattcattactgcaagttcaat |
35348575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 2275881 - 2275652
Alignment:
| Q |
22 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2275881 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
2275782 |
T |
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| Q |
122 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagata |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2275781 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagata |
2275682 |
T |
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| Q |
222 |
tattcatcaattcattactgcaagttcaat |
251 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2275681 |
tattcatcaattcattactgcaagttcaat |
2275652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 39347372 - 39347143
Alignment:
| Q |
22 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
121 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39347372 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
39347273 |
T |
|
| Q |
122 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagata |
221 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39347272 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagata |
39347173 |
T |
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| Q |
222 |
tattcatcaattcattactgcaagttcaat |
251 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39347172 |
tattcatcaattcattactgcaagttcaat |
39347143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 4013215 - 4012986
Alignment:
| Q |
22 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
121 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4013215 |
catcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctc |
4013116 |
T |
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| Q |
122 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagata |
221 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4013115 |
ctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaaaatatttaacctgtgcaatttgagata |
4013016 |
T |
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| Q |
222 |
tattcatcaattcattactgcaagttcaat |
251 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4013015 |
tattcatcaattcattactgcaagttcaat |
4012986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 52 - 251
Target Start/End: Complemental strand, 25880049 - 25879850
Alignment:
| Q |
52 |
ataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtct |
151 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25880049 |
ataagttcttcaaaaatcatgactactactcacattcacttttttctagagaaatacttagtcaaacctcctctttcataagttcataggaaatatgtct |
25879950 |
T |
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| Q |
152 |
taaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaat |
251 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25879949 |
taaaatgggcacatgaaaagggtttcttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattagtgcaagttcaat |
25879850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 25880105 - 25880077
Alignment:
| Q |
22 |
catcatcaaatggagagaacactaaatgt |
50 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
25880105 |
catcatcaaatggagagaacactaaatgt |
25880077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 48 - 251
Target Start/End: Original strand, 10789346 - 10789550
Alignment:
| Q |
48 |
tgtcataagttcttcaaaaatcatgactactacccacaatcactttt-ttctagagaaatacttagtcaaccctcctctttcataagttcataggaaata |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10789346 |
tgtcataagttcttcaaaaatcatgactactacccacattcactttttttctagagaaatacttagtcaaacctcctctttcataagttcataggaaata |
10789445 |
T |
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| Q |
147 |
tgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagt |
246 |
Q |
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|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10789446 |
tgtcttaaaatgggcacatgaaaaaggtttcttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattagtgcaagt |
10789545 |
T |
|
| Q |
247 |
tcaat |
251 |
Q |
| |
|
||||| |
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|
| T |
10789546 |
tcaat |
10789550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 10789293 - 10789321
Alignment:
| Q |
22 |
catcatcaaatggagagaacactaaatgt |
50 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
10789293 |
catcatcaaatggagagaacactaaatgt |
10789321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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