View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0201_low_20 (Length: 251)
Name: NF0201_low_20
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39579687 - 39579927
Alignment:
| Q |
1 |
cactcattccattcttgagaactcccttataaacatttccaaaaccaccttttccgattatcctatccgcatcaaaattctctgttgcgaattgaagatc |
100 |
Q |
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| T |
39579687 |
cactcattccattcttgagaactcccttataaacatttccaaaaccaccttttccgattatcctatccgcatcaaaattctctgttgcgaattgaagatc |
39579786 |
T |
|
| Q |
101 |
aagcaaggagattttcaggccaaggtttatgttaggtaaaggcgagccttgagttgtttttccatatgttaatcttctaagggatatccctcctgcagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39579787 |
aagcaaggagattttcaggccaaggtttatgttaggtaaaggcgagccttgagttgtttttccatatgttaatcttctaagggatatccctcctgcagca |
39579886 |
T |
|
| Q |
201 |
gctggagtcgccaaaaaaccggaattctccacgggcctttg |
241 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||||| |
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| T |
39579887 |
gcttgagtcgccaaaaaaccggaattctccacaggcctttg |
39579927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 39575154 - 39575391
Alignment:
| Q |
4 |
tcattccattcttgagaactcccttataaacatttccaaaaccaccttttccgattatcctatccgcatcaaaattctctgttgcgaattgaagatcaag |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| | | |||||||||||| || |||| |||||| ||||| |
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| T |
39575154 |
tcattccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctcggtggcgatttgaaggtcaag |
39575253 |
T |
|
| Q |
104 |
caaggagattttcaggccaaggtttatgttaggtaaaggcgagccttgagttgtttttccatatgttaatcttctaagggatatccctcctgcagcagct |
203 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||| | || |||||||||||||||| | |
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| T |
39575254 |
caaggagattttcatgccaaggtttatgttaggtaaaggtgagccttgagttgtttttccataagttaatttgctatgagaaatccctcctgcagcagtt |
39575353 |
T |
|
| Q |
204 |
ggagtcgccaaaaaaccggaattctccacgggcctttg |
241 |
Q |
| |
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||| ||| ||| ||| || || |||| || |||||||| |
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| T |
39575354 |
ggaatcggcaacaaatcgaaactctcaacaggcctttg |
39575391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 39543319 - 39543521
Alignment:
| Q |
4 |
tcattccattcttgagaactcccttataaacatttccaaaaccaccttttccgattatcctatccgcatcaaaattctctgttgcgaattgaagatcaag |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| | | |||||||||||| || |||| |||||| ||||| |
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| T |
39543319 |
tcattccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctcggtggcgatttgaaggtcaag |
39543418 |
T |
|
| Q |
104 |
caaggagattttcaggccaaggtttatgttaggtaaaggcgagccttgagttgtttttccatatgttaatcttctaagggatatccctcctgcagcagct |
203 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||| | || ||| |||||||||||| | |
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| T |
39543419 |
caaggagattttcatgccaaggtttatgttaggtaaaggtgagccttgagttgtttttccataagttaatttgctatgagaaatctctcctgcagcagtt |
39543518 |
T |
|
| Q |
204 |
gga |
206 |
Q |
| |
|
||| |
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|
| T |
39543519 |
gga |
39543521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 39510261 - 39510405
Alignment:
| Q |
8 |
tccattcttgagaactcccttataaacatttccaaaaccaccttttccgattatcctatccgcatcaaaattctctgttgcgaattgaagatcaagcaag |
107 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||| | |||||||| || || |||||||||||||||||||||||| |
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| T |
39510261 |
tccattcctgagaactcccttataaacaattccaaaaccaccctttccaattatcctctttgcatcaaagttatccgttgcgaattgaagatcaagcaag |
39510360 |
T |
|
| Q |
108 |
gagattttcaggccaaggtttatgttaggtaaaggcgagccttga |
152 |
Q |
| |
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| |||||||| || |||||||||||||||||||| ||||||||| |
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| T |
39510361 |
gggattttcaatccgaggtttatgttaggtaaaggggagccttga |
39510405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 39520519 - 39520686
Alignment:
| Q |
8 |
tccattcttgagaactcccttataaacatttccaaaaccaccttttccgattatcctatccgcatcaaaattctctgttgcgaattgaagatcaagcaag |
107 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||||||||||| ||||| || ||||| | ||||| ||||| || ||||| ||||||||||||||||| |
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| T |
39520519 |
tccattcgtgaggactcccttataaacaattccaaaaccaccctttccaataatcctctttgcatcgaaattatccgttgcaaattgaagatcaagcaaa |
39520618 |
T |
|
| Q |
108 |
gagattttcaggccaaggtttatgttaggtaaaggcgagccttgagttgtttttccatatgttaatct |
175 |
Q |
| |
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| |||||||| ||||||||||||||||||||||| ||||||||| ||||| || ||| |||||||| |
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| T |
39520619 |
gggattttcaatccaaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatct |
39520686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 39524092 - 39524171
Alignment:
| Q |
96 |
agatcaagcaaggagattttcaggccaaggtttatgttaggtaaaggcgagccttgagttgtttttccatatgttaatct |
175 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| ||||| || ||| |||||||| |
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| T |
39524092 |
agatcaagcaaagggattttcaatccaaggtttatgttaggtaaaggcgagccttgaattgttgttgcatcagttaatct |
39524171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 5855170 - 5855207
Alignment:
| Q |
18 |
agaactcccttataaacatttccaaaaccaccttttcc |
55 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||| |
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|
| T |
5855170 |
agaactcctttgtaaacatttccaaaaccaccttttcc |
5855207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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