View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0201_low_23 (Length: 245)
Name: NF0201_low_23
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7025126 - 7025346
Alignment:
| Q |
1 |
tagtgtccatccatctgttttctctctgaaaaagcttaagaaattggatctgagtggatgcatttcccttacaagccttcaaagcaatacccaattaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7025126 |
tagtgtccatccatctgttttctctctgaaaaagcttaagaaactggatctgagtggatgcatttcccttacaagccttcaaagcaatacccaattaatc |
7025225 |
T |
|
| Q |
101 |
tcccttagtgatctctccctctacaattgtacagcactgaaggaattctcagtgacctcaaagaatatgaagaaattgaatttagaacgcacgagtatca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7025226 |
tcccttagtgatctctccctctacaattgtacatcactgaaggaattctcagtgacctcaaagaatatgaagaaattgaatttagaacgcacgagtatca |
7025325 |
T |
|
| Q |
201 |
aacaagtgccctcatcaattg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7025326 |
aacaagtgccctcatcaattg |
7025346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7038200 - 7038420
Alignment:
| Q |
1 |
tagtgtccatccatctgttttctctctgaaaaagcttaagaaattggatctgagtggatgcatttcccttacaagccttcaaagcaatacccaattaatc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
7038200 |
tagtgttcatccatctgttttctctctcaaaaatcttgagaaactggatttgagtggatgcatttcccttacaagccttcaaagcaatactcatttaagt |
7038299 |
T |
|
| Q |
101 |
tcccttagtgatctctccctctacaattgtacagcactgaaggaattctcagtgacctcaaagaatatgaagaaattgaatttagaacgcacgagtatca |
200 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
7038300 |
tcccttagttatctctccctctacaactgcacagcactgaaggaattctcagtgacttcaaagcatatgagcgtattgaatttagatggcacgagtatca |
7038399 |
T |
|
| Q |
201 |
aacaagtgccctcatcaattg |
221 |
Q |
| |
|
|| || | ||||||||||||| |
|
|
| T |
7038400 |
aagaactaccctcatcaattg |
7038420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7073828 - 7073608
Alignment:
| Q |
1 |
tagtgtccatccatctgttttctctctgaaaaagcttaagaaattggatctgagtggatgcatttcccttacaagccttcaaagcaatacccaattaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |||||| | |||||||||||||||||| || |||| |
|
|
| T |
7073828 |
tagtgtccatccatctgttttctctctcaaaaatcttgagaaattggatctgagtggatgcagttccctgaaaagccttcaaagcaatactcatttaagt |
7073729 |
T |
|
| Q |
101 |
tcccttagtgatctctccctctacaattgtacagcactgaaggaattctcagtgacctcaaagaatatgaagaaattgaatttagaacgcacgagtatca |
200 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| || | || ||||||||| ||| ||||||| |
|
|
| T |
7073728 |
tcccttagttatctctccctctacaactgcacagcactgaaggaattctcagtgacctcggagaatataaacgagttagatttagaactcactagtatca |
7073629 |
T |
|
| Q |
201 |
aacaagtgccctcatcaattg |
221 |
Q |
| |
|
|| || | || |||||||||| |
|
|
| T |
7073628 |
aagaattaccatcatcaattg |
7073608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7032505 - 7032726
Alignment:
| Q |
1 |
tagtgtccatccatctgttttctctctgaaaaagcttaagaaattggatctgagtggatgcatttcccttacaagccttcaaagcaat---acccaatta |
97 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||| |
|
|
| T |
7032505 |
tagtgtccatccatctgttttgtctc--aaaaagctcaaggaactggatctgagtggatgcatttcccttacgagccttcaaagcaatgacacccattta |
7032602 |
T |
|
| Q |
98 |
atctcccttagtgatctctccctctacaattgtacagcactgaaggaattctcagtgacctcaaagaatatgaagaaattgaatttagaacgcacgagta |
197 |
Q |
| |
|
| |||||||| |||||||||||||||| || ||| || ||||||||||||||||||||||||| ||||||| | |||| |||||||| ||||||||| |
|
|
| T |
7032603 |
agttcccttaggtatctctccctctacaactgcacatcagtgaaggaattctcagtgacctcaaaacatatgaacatattggatttagaaggcacgagta |
7032702 |
T |
|
| Q |
198 |
tcaaacaagtgccctcatcaattg |
221 |
Q |
| |
|
||||| | | ||||||||||||| |
|
|
| T |
7032703 |
tcaaaaatctaccctcatcaattg |
7032726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 7067447 - 7067371
Alignment:
| Q |
11 |
ccatctgttttctctctgaaaaagcttaagaaattggatctgagtggatgcatttcccttacaagccttcaaagcaa |
87 |
Q |
| |
|
|||||||| || |||||||| |||||| ||||||||||||| ||||||| ||||||| |||||||| ||||||| |
|
|
| T |
7067447 |
ccatctgtattttctctgaacaagcttgagaaattggatctaggtggatgtttttccctcacaagcctcaaaagcaa |
7067371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1730 times since January 2019
Visitors: 2393