View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0201_low_24 (Length: 244)
Name: NF0201_low_24
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 7024900 - 7024723
Alignment:
| Q |
2 |
ttcgaaatatcctttttggtctcatattggtcctttatttctaaatatgagtcaactttagtctttgtttatagcgaactacgccagtcagagagcatat |
101 |
Q |
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| T |
7024900 |
ttcgaaatatcatttttggtctcatattggtcctttatttctaaatatgagtcaactttagtctttgtttatagccaactacgccagtcagagagcatat |
7024801 |
T |
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| Q |
102 |
gaaaaagctactgaatcttggaggtagaaatcatttctttcaaccattcaaccacatttaacttacaaccttggtccc |
179 |
Q |
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| T |
7024800 |
gaaaaagctactgaatcttggaggtagaaatcatttctttcaaccattcaaccacatttaacttacaaccttggtccc |
7024723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 7074094 - 7074226
Alignment:
| Q |
38 |
atttctaaatatgagtcaactttagtctttgtttatagcgaactacgccagtcagagagcatatgaaaaagctactgaatcttggaggtagaaatcattt |
137 |
Q |
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| T |
7074094 |
atttctaaatatgtatcaactttggtctttatttatagcaaactacgccagtcagagagcatataaaaatgctattgaattttggtggtagaaataattg |
7074193 |
T |
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| Q |
138 |
ctttcaaccattcaaccacatttaacttacaac |
170 |
Q |
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| T |
7074194 |
ctttcaacccttcaagcacatttaacttccaac |
7074226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 7037938 - 7037787
Alignment:
| Q |
19 |
ggtctcatattggtcctttatttctaaatatgagtcaactttagtctttgtttatagcgaactacgccagtcagagagcatatgaaaaagctactgaatc |
118 |
Q |
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| T |
7037938 |
ggtcttatattgatccttcatttctaaatacgtgtcacctttgatctttatttgtagcgaactacacgagtcagagagcatataaagaaactcttgaatt |
7037839 |
T |
|
| Q |
119 |
ttggaggtagaaatcatttctttcaaccattcaaccacatttaacttacaac |
170 |
Q |
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| T |
7037838 |
ttgggagtaggaataattgctttcaactattgaagcacatttaacttgcaac |
7037787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 7024705 - 7024666
Alignment:
| Q |
195 |
cttgcaactaaaatttaatagcatttacacaggctctctg |
234 |
Q |
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| T |
7024705 |
cttgcaactaaaatttaatagcttttacacaggctctctg |
7024666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 7032171 - 7032084
Alignment:
| Q |
78 |
aactacgccagtcagagagcatatgaaaaagctactgaatcttggaggtagaaatcatttctttcaaccattcaaccacatttaactt |
165 |
Q |
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||||||| |||||||||| |||| ||||||| | ||||| |||| | ||||||| ||| ||||||| ||||||| |||||||||||| |
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| T |
7032171 |
aactacgtgagtcagagaggatataaaaaagcaattgaattttggtgatagaaataattgctttcaatcattcaagcacatttaactt |
7032084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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