View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0201_low_26 (Length: 230)
Name: NF0201_low_26
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_low_26 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0240 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 33631969 - 33631769
Alignment:
| Q |
30 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33631969 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttgaaatttggccaataagaaggatgttttatgggtgaaatgggt |
33631870 |
T |
|
| Q |
130 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagactatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
33631869 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatt |
33631770 |
T |
|
| Q |
230 |
t |
230 |
Q |
| |
|
| |
|
|
| T |
33631769 |
t |
33631769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 18261889 - 18261687
Alignment:
| Q |
32 |
tggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataa----gaaggatgttttatgggtgaaatgg |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
18261889 |
tggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataattaagaaggatgttttttgggtgaaatgg |
18261790 |
T |
|
| Q |
128 |
gttcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagacta |
227 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
18261789 |
gttcatgaatattacattaaggggaggaatgtgctactcatggatgtgcctacacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagacta |
18261690 |
T |
|
| Q |
228 |
ttt |
230 |
Q |
| |
|
||| |
|
|
| T |
18261689 |
ttt |
18261687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 33623764 - 33623663
Alignment:
| Q |
129 |
ttcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagactat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
33623764 |
ttcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggtaataaaaaaaatctttggtgcagcaaagactat |
33623665 |
T |
|
| Q |
229 |
tt |
230 |
Q |
| |
|
|| |
|
|
| T |
33623664 |
tt |
33623663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 7478569 - 7478470
Alignment:
| Q |
95 |
gccaataagaaggatgttttatgggtgaaatgggttcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatggg |
194 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||||||||||||| || ||||| |||||||| || ||||| || || ||||||||||||||| |
|
|
| T |
7478569 |
gccaataagaaagatgtcttatgggtgaagtgggttcatgaatattacataaaagggagaaatgtgcttctaatggaagtaccatcacaagcttcatggg |
7478470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 3423794 - 3423594
Alignment:
| Q |
30 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3423794 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
3423695 |
T |
|
| Q |
130 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagactatt |
229 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
3423694 |
tcatgaatattacactatggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatt |
3423595 |
T |
|
| Q |
230 |
t |
230 |
Q |
| |
|
| |
|
|
| T |
3423594 |
t |
3423594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 30280987 - 30280787
Alignment:
| Q |
30 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30280987 |
ggtggaatgtaattgatttgaaagtttggaaccaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
30280888 |
T |
|
| Q |
130 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagactatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
30280887 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatt |
30280788 |
T |
|
| Q |
230 |
t |
230 |
Q |
| |
|
| |
|
|
| T |
30280787 |
t |
30280787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 41100148 - 41099948
Alignment:
| Q |
30 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41100148 |
ggtggaatgtaattgatttgaaagtttggagtcaagctgcaatttgtaaacttctttgaaatttggccaataagaaggatgttttatgggtgaaatgggt |
41100049 |
T |
|
| Q |
130 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagactatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
41100048 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatt |
41099949 |
T |
|
| Q |
230 |
t |
230 |
Q |
| |
|
| |
|
|
| T |
41099948 |
t |
41099948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 7279664 - 7279862
Alignment:
| Q |
32 |
tggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggttc |
131 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
7279664 |
tggaatgttattgatttgaaagcttggaatcaagctgcaatttgtaaacttctttgaaacttggccaacaagaaggatgttcaatgggtgaaatgggttc |
7279763 |
T |
|
| Q |
132 |
atgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagactattt |
230 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||| ||||| |
|
|
| T |
7279764 |
atgaatattacaccaaggggagaaatgtgctactcatggatgtgcctggacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagattattt |
7279862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 39045742 - 39045581
Alignment:
| Q |
30 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||| |||| |||||||||||||||| |||||| |||| |
|
|
| T |
39045742 |
ggtggaatgtaattgatttgaaagtttgaaatcaaactgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggt |
39045643 |
T |
|
| Q |
130 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatg |
192 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
39045642 |
tcatgaatattatactaatgggaggaatatgctactcatggatgtg-ctgcacaagcttcatg |
39045581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 27180199 - 27180066
Alignment:
| Q |
32 |
tggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggttc |
131 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||||| || || | | | ||||| ||||| || |||||||||||||||||||| |||||||| | |
|
|
| T |
27180199 |
tggaatgtcattgatttgaaatgttggaaccaagctgctatcatcaagcatttatggaacttggcaaacaagaaggatgttttatgggtaaaatgggtac |
27180100 |
T |
|
| Q |
132 |
atgaatattacactaaggggaggaatgtgctact |
165 |
Q |
| |
|
||||||| |||| || ||||||||||||||||| |
|
|
| T |
27180099 |
atgaatactacataaaagggaggaatgtgctact |
27180066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 10714813 - 10714901
Alignment:
| Q |
55 |
ttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggttcatgaatattaca |
143 |
Q |
| |
|
|||||| |||| |||| | ||||||| ||||||| |||||||||||||||||||| |||||| |||| | ||||||||||| ||||| |
|
|
| T |
10714813 |
ttggaaccaagttgcactctgtaaacaattttggaacttggccaataagaaggatgtcttatggatgaagttggttcatgaattttaca |
10714901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 13941015 - 13941094
Alignment:
| Q |
86 |
tggaatttggccaataagaaggatgttttatgggtgaaatgggttcatgaatattacactaaggggaggaatgtgctact |
165 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||| |||| ||| |||||||| |||| || ||||| ||||||||||| |
|
|
| T |
13941015 |
tggaacttggctaacaagaaggatgttttatgggtaaaataggtacatgaatactacataaaagggagaaatgtgctact |
13941094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 3938753 - 3938553
Alignment:
| Q |
30 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3938753 |
ggtggaatgtaattgatttgaaagtttgaaaccaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
3938654 |
T |
|
| Q |
130 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagactatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
3938653 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatt |
3938554 |
T |
|
| Q |
230 |
t |
230 |
Q |
| |
|
| |
|
|
| T |
3938553 |
t |
3938553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 5673430 - 5673565
Alignment:
| Q |
30 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
129 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| || | |||| | | ||| | ||||| |||||||||||| ||| |||||| |||||||| |
|
|
| T |
5673430 |
ggtggaatgtcattgatttgaaatgttggaatcaagctgctatcagcaaacatttctggcacttggctaataagaaggatatttcatgggtaaaatgggt |
5673529 |
T |
|
| Q |
130 |
tcatgaatattacactaaggggaggaatgtgctact |
165 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||| |
|
|
| T |
5673530 |
acatgaatactacataaaagggaggaatgtgctact |
5673565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 45066478 - 45066556
Alignment:
| Q |
152 |
aggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagactattt |
230 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
45066478 |
aggaatgtgttactcatggatgtgcatgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactattt |
45066556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 17226 - 17426
Alignment:
| Q |
30 |
ggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17226 |
ggtggaatgtaattgatttgaaagtttggaatcaaactgcaatttgtaaacttctttggaatttggccaacaagaaggatgttttatgggtgaaatgggt |
17325 |
T |
|
| Q |
130 |
tcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggcaatnnnnnnngtctttggtgtagcaaagactatt |
229 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||| | ||||||||||| |
|
|
| T |
17326 |
tcgtgaatattacactaaggggaggaatgtgctactcatggatgtgtctgcacaagctccatgggtaataaaaaaagtctttggtgcaacaaagactatt |
17425 |
T |
|
| Q |
230 |
t |
230 |
Q |
| |
|
| |
|
|
| T |
17426 |
t |
17426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 49821112 - 49821233
Alignment:
| Q |
41 |
attgatttgaaagtttggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggttcatgaatatt |
140 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||||| |||||| | |||||||||| || ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
49821112 |
attgatttgaaagtttgaaatcaagttgtaatttttaaacaactttggtacctggccaataaaaaagatgttttatgagtgaaatgggttcatgagtatc |
49821211 |
T |
|
| Q |
141 |
acactaaggggaggaatgtgct |
162 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
49821212 |
acaataaggggaggaatgtgct |
49821233 |
T |
|
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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 1161061 - 1161160
Alignment:
| Q |
95 |
gccaataagaaggatgttttatgggtgaaatgggttcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatggg |
194 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||||||||||||| || ||||| |||||||| || ||||| || || ||||||||||||||| |
|
|
| T |
1161061 |
gccaataagaaagatgtcttatgggtgaagtgggttcatgaatattacataaaagggagaaatgtgcttctaatggaagtaccatcacaagcttcatggg |
1161160 |
T |
|
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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 24318965 - 24318923
Alignment:
| Q |
101 |
aagaaggatgttttatgggtgaaatgggttcatgaatattaca |
143 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
24318965 |
aagaaggatgttttatgggtgaaatgagttcatgaatactaca |
24318923 |
T |
|
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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 24319196 - 24319152
Alignment:
| Q |
23 |
atcatcaggtggaatgtaattgatttgaaagtttggaatcaagct |
67 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
24319196 |
atcatcaggtggaatgtcattgatttgaaatgttggaatcaagct |
24319152 |
T |
|
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