View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0201_low_29 (Length: 205)
Name: NF0201_low_29
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 378253 - 378417
Alignment:
| Q |
20 |
acatcatcaccatcaccatttatgctcttacaacagaattataaactattcttctctcaatttcagtcctatccccctttcttgttacaatacaattata |
119 |
Q |
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| T |
378253 |
acatcatcaccatcaccatttatgctcttacaacagaattataaactattcttctctcaatttcagtcatatccccctttcttgttacaatacaattata |
378352 |
T |
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| Q |
120 |
gattactcttgttcaaggtttggtgttcgtgcctctgtttttagtgtattgtaacagaatatgac |
184 |
Q |
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| T |
378353 |
gattactcttgttcaaggtttggtgttcgtgcctctgtttttagtgtattgtaacagaatatgac |
378417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 50838712 - 50838876
Alignment:
| Q |
20 |
acatcatcaccatcaccatttatgctcttacaacagaattataaactattcttctctcaatttcagtcctatccccctttcttgttacaatacaattata |
119 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50838712 |
acatcatcaccatcactatttatgctcttacaagagaattataaactattcttctctcaatttcagtcatatccccctttcttgttacaatacaattata |
50838811 |
T |
|
| Q |
120 |
gattactcttgttcaaggtttggtgttcgtgcctctgtttttagtgtattgtaacagaatatgac |
184 |
Q |
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|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
50838812 |
gattactcttgttcaaggtttggtgttcgttcttctttttttagtgtattgtaacagaatatgac |
50838876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 50837142 - 50836977
Alignment:
| Q |
20 |
acatcatcaccatcaccatttatgctcttacaacagaattataaactattcttctctcaatttcagtcctatccccctttcttgttacaatacaattata |
119 |
Q |
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|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50837142 |
acatcatcaccatcactatttatgctcttacaagagaattataaactattcttctctcaatttcagtcatatccccctttcttgttacaatacaattata |
50837043 |
T |
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| Q |
120 |
gattactcttgttcaaggtttggtgttcgtgc-ctctgtttttagtgtattgtaacagaatatgac |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
50837042 |
gattactcttgttcaaggtttggtgttcgtacattctttttttagtgtattgtaacagaatatgac |
50836977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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