View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0201_low_6 (Length: 420)
Name: NF0201_low_6
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0201_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 31661671 - 31661281
Alignment:
| Q |
30 |
cattggtccattcaaatatatataggcaaagattaatctcttaaagtcagttttctgaatcgccgacttggtagatagatcacttttcaacgttgtggta |
129 |
Q |
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| T |
31661671 |
cattggtccattcaaatatatataggcaaagattaatcttttaaagtcagttttctgaatcgccgatttggtagatagatcacttttcaacgttgtggta |
31661572 |
T |
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| Q |
130 |
ctctattcaaatctagcacccgtgagaagaaagattaaccttataatnnnnnnnnnnnnnnnnnnn--tctcaatcaatagtagtactttgttttcatat |
227 |
Q |
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| T |
31661571 |
ctctattcaaatctagcacccgtgagaagaaagattaaccttataatgagtgtgagagagagagagagtctcaatcaatagtagtactttgtttttaaat |
31661472 |
T |
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| Q |
228 |
atgaaaagtcaattgtaaatacatcaatctatacgcaaaggttaatttagtaaaaataatatataagatgcaaacactaattacactaccaattttgttt |
327 |
Q |
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| T |
31661471 |
atgaaaagtcaattgtaaatacatctatctatacgcaaaggttaatttagtaaaaataatatataagatgcaaacactgattacactaccaattttgttt |
31661372 |
T |
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| Q |
328 |
aacatatgtgaaaaatgtcaaaggatatttataaaaagggacggatagagtacatctcggctaactcagatgattaacctatgatactaca |
418 |
Q |
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| T |
31661371 |
aacatatgtgaaaaatgtcaaaggatatttataaaaaaggacggagagagtacatctcggttaactgagatgattaacctatgatattaca |
31661281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 233 - 412
Target Start/End: Complemental strand, 31672770 - 31672592
Alignment:
| Q |
233 |
aagtcaattgtaaatacatcaatctatacgcaaaggttaatttagtaaaaataatatataagatgcaaacactaattacactaccaattttgtttaacat |
332 |
Q |
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||||||||||||||||||| |||||||| |||| || |||||||||||| || || |||| || | ||| | ||||||| ||||| ||| |||||||| |
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| T |
31672770 |
aagtcaattgtaaatacatatatctatacacaaaagt-aatttagtaaaagtattacataaaatatacacattcattacaccaccaactttttttaacat |
31672672 |
T |
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| Q |
333 |
atgtgaaaaatgtcaaaggatatttataaaaagggacggatagagtacatctcggctaactcagatgattaacctatgat |
412 |
Q |
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||||||||||| | ||||||| |||||||||| |||||| ||||||||| |||||||| ||||||||| |||||| |
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| T |
31672671 |
atgtgaaaaatataaaaggatgtttataaaaaatgacggaggaagtacatcttaactaactcaaatgattaacatatgat |
31672592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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