View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0201_low_8 (Length: 358)

Name: NF0201_low_8
Description: NF0201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0201_low_8
NF0201_low_8
[»] chr1 (3 HSPs)
chr1 (1-209)||(17032910-17033118)
chr1 (42-205)||(42373613-42373777)
chr1 (129-197)||(50589816-50589884)
[»] chr5 (2 HSPs)
chr5 (39-201)||(39184656-39184817)
chr5 (42-203)||(8730355-8730514)
[»] chr2 (2 HSPs)
chr2 (1-197)||(22885900-22886093)
chr2 (42-203)||(25505393-25505552)
[»] chr4 (3 HSPs)
chr4 (57-176)||(46699364-46699483)
chr4 (103-171)||(12295569-12295637)
chr4 (71-152)||(38929237-38929318)
[»] chr8 (1 HSPs)
chr8 (1-111)||(9519096-9519203)
[»] chr3 (2 HSPs)
chr3 (13-165)||(25595054-25595202)
chr3 (39-198)||(5556059-5556217)
[»] chr7 (1 HSPs)
chr7 (1-30)||(38305715-38305744)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 17032910 - 17033118
Alignment:
Q  1 tttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgct 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17032910 tttgttgttggatttcgtcttcctctagatatgtgatattatgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgct 17033009  T
Q  101 gatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgttgg 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17033010 gatttgtgggtttattcaacgtggctgcttcttcggaatgctatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgctgg 17033109  T
Q  201 tcgtgatgc 209  Q
    |||||||||    
T  17033110 tcgtgatgc 17033118  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 42373613 - 42373777
Alignment:
Q  42 tgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgc 141  Q
    |||| |||| |||||||||||||||  |||||| | | |||||||| |||| ||||  || || |||||| ||||||  |||| ||||||||||||||||    
T  42373613 tgttactgcctgttttcttggtgaggtggtttgacggcgtagtttt-gtctctatctttggtt-gtgggtatattcactgtggctgcttcttcggaatgc 42373710  T
Q  142 tatggcgatgtggctgctttccttagagaccttcaactttg--ttg-tcttgttcttgttggtcgtg 205  Q
    ||||||||||| |||| ||||||| ||||||||||||||||  ||| ||||||||||| ||||||||    
T  42373711 tatggcgatgttgctgatttccttggagaccttcaactttgtcttgctcttgttcttgatggtcgtg 42373777  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 50589884 - 50589816
Alignment:
Q  129 ttcttcggaatgctatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgt 197  Q
    ||||||| |||||||| | ||||| ||||||||||||  ||||  ||||| ||||||||||| ||||||    
T  50589884 ttcttcgaaatgctatagtgatgttgctgctttccttgaagactatcaaccttgttgtcttgctcttgt 50589816  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 201
Target Start/End: Complemental strand, 39184817 - 39184656
Alignment:
Q  39 ttgtgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaa 138  Q
    |||||||||||  ||||||||||||||| ||||||||| | |||||||| | || ||||| ||  |||||||| |||||  ||||| |||||||||||||    
T  39184817 ttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttgg-ctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaa 39184719  T
Q  139 tgctatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgttggt 201  Q
    |||||||||| |||||| |||||||||  || | ||||||||||||||||||||  |||||||    
T  39184718 tgctatggcgttgtggccgctttccttgaagtctttcaactttgttgtcttgttggtgttggt 39184656  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 8730355 - 8730514
Alignment:
Q  42 tgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgc 141  Q
    ||||||||| ||||||| || |||||| |||||||||||||||| | |||| ||||| || || |||||| |||| |  |||| ||| ||||   |||||    
T  8730355 tgttgctgcctgttttcatg-tgagacagtttggcagtgtagttct-gtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgc 8730452  T
Q  142 tatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgttggtcg 203  Q
    ||||||||||| | ||||| |||| ||||| |||||||||||||||||| ||||||| ||||    
T  8730453 tatggcgatgttgttgcttaccttggagactttcaactttgttgtcttgctcttgtttgtcg 8730514  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 22886093 - 22885900
Alignment:
Q  1 tttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgct 100  Q
    ||||||||||| |||| ||||||||| ||||||| |   ||||||||||||||||| |||||||||  |||||||| | || |||| | ||| |||| ||    
T  22886093 tttgttgttgggtttcatcttcctcttgatatgtaac--tgtgttgctgcttgttt-cttggtgaggtggtttggcggcgtggtttctatctctatcact 22885997  T
Q  101 gatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgt 197  Q
      ||||||||| |||||   |||| |||||||||| ||||||| ||||||||  ||||||||||||||||| |||||  ||||||||||| ||||||    
T  22885996 agtttgtgggtatattcgttgtggctgcttcttcgaaatgctaaggcgatgttcctgctttccttagagactttcaatcttgttgtcttgctcttgt 22885900  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 25505552 - 25505393
Alignment:
Q  42 tgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgc 141  Q
    ||||||||| ||||||| || |||||| |||||||||||||||| | |||| ||||| || || |||||| |||| |  |||| ||| ||||   |||||    
T  25505552 tgttgctgcctgttttcatg-tgagacagtttggcagtgtagttct-gtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgc 25505455  T
Q  142 tatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgttggtcg 203  Q
    ||||||||||| | ||||| |||| ||||| |||||||||||||||||| ||||||| ||||    
T  25505454 tatggcgatgttgttgcttaccttggagactttcaactttgttgtcttgctcttgtttgtcg 25505393  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 46699483 - 46699364
Alignment:
Q  57 tcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggct 156  Q
    ||||||||||  |||||||| | ||||||| | |||||||||||| |||||||||  ||||| | ||| ||||||||||||||| ||||| ||||| |||    
T  46699483 tcttggtgaggtggtttggcggcgtagtttatatctttatcgctggtttgtgggtaaattcaccatggctgcttcttcggaatgttatggtgatgttgct 46699384  T
Q  157 gctttccttagagaccttca 176  Q
    ||||||||| ||||| ||||    
T  46699383 gctttccttcgagactttca 46699364  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 12295569 - 12295637
Alignment:
Q  103 tttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctttccttagagac 171  Q
    ||||||||| |||||| ||||| ||||||||| ||||||||||| |||||  ||||||| ||| |||||    
T  12295569 tttgtgggtatattcaccgtggctgcttcttcagaatgctatggtgatgttactgcttttcttggagac 12295637  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 38929237 - 38929318
Alignment:
Q  71 tttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgt 152  Q
    |||| ||||||||| ||||||| | ||| || |||||||||| || |  ||||| || |||||||||||||||||| |||||    
T  38929237 tttgacagtgtagtctttgtctctttcgatggtttgtgggttaatactccgtggttgtttcttcggaatgctatggtgatgt 38929318  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9519096 - 9519203
Alignment:
Q  1 tttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgct 100  Q
    ||||||||||| ||||||||| |||||||| |||| |  ||| |||||| |||||||| |||||||  || ||||| ||||||||||||||  |||||||    
T  9519096 tttgttgttgggtttcgtctttctctagatttgtgtt--tgtattgctg-ttgttttcatggtgaggtgggttggcggtgtagtttttgtccctatcgct 9519192  T
Q  101 gatttgtgggt 111  Q
    | |||||||||    
T  9519193 ggtttgtgggt 9519203  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 25595202 - 25595054
Alignment:
Q  13 tttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtt 112  Q
    ||||||| |||||||||| |||  | |||||||||||||||||| ||||||||| ||||||||||  |||| ||| |||| |||||||  ||| |||||     
T  25595202 tttcgtcatcctctagatttgt--ttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtag-tttcgtctctatcgctcgtttatgggta 25595107  T
Q  113 tattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctttcctt 165  Q
    | || | ||||| ||| | || |||| || |||||||||| ||||||||||||    
T  25595106 ttttaaccgtggctgcatttttggaaggcaatggcgatgttgctgctttcctt 25595054  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 198
Target Start/End: Original strand, 5556059 - 5556217
Alignment:
Q  39 ttgtgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaa 138  Q
    |||||||||||||||||||| ||||| | ||||| ||| |  | | |||||||| | |||||| ||||||||| ||||||   ||| |||||||||||||    
T  5556059 ttgtgttgctgcttgttttcatggtgtggcggttaggctgcattg-ttttgtctctgtcgctggtttgtgggtatattcactatggttgcttcttcggaa 5556157  T
Q  139 t-gctatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgtt 198  Q
    |  |||| | ||||| |||||||||||||||| | | |  ||||||||||||  |||||||    
T  5556158 tccctat-gtgatgttgctgctttccttagagtcttccgcctttgttgtctttctcttgtt 5556217  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38305715 - 38305744
Alignment:
Q  1 tttgttgttggatttcgtcttcctctagat 30  Q
    ||||||||||||||||||||||||||||||    
T  38305715 tttgttgttggatttcgtcttcctctagat 38305744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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