View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0202_high_2 (Length: 395)
Name: NF0202_high_2
Description: NF0202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0202_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 30 - 354
Target Start/End: Original strand, 39280336 - 39280660
Alignment:
| Q |
30 |
gtaaaacccagcaaacgaactattcctatttctttcaagtttcaaccaaaacaatacattacttcaatttctaacatcacaatgctatatacacttgcag |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39280336 |
gtaaaacccagcaaacgaactattcctatttctttcaagtttcaaccaaaacaatccattacttcaattactaacatcacaatgctatatacacttgcag |
39280435 |
T |
|
| Q |
130 |
tgcaagttaagatatcaatacaagagaatcaggcnnnnnnncaatatgtattatactactattttcatatttacaagaaccttgaagaaggaaacctaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280436 |
tgcaagttaagatatcaatacaagagaatcaggcaaaaaaacaatatgtattatactactatttacatatttacaagaaccttgaagaaggaaacctaat |
39280535 |
T |
|
| Q |
230 |
ggaatcaacagacctaagaactctgtcatcaaaccgatcagactcggttcttctgtcttttgtcactgtcctgttaagcttcccttcttctcgatacacc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39280536 |
ggaatcaacagacctaagaactctgtcatcaaaccgatcagactcggttcttctgtcttttgtcactgtcctgttaagcttcccttcttctctatacacc |
39280635 |
T |
|
| Q |
330 |
ttcatcctcccaaccttttccttca |
354 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39280636 |
ttcatcctcccaaccttttccttca |
39280660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2130 times since January 2019
Visitors: 2399