View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0202_low_1 (Length: 535)
Name: NF0202_low_1
Description: NF0202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0202_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 91 - 527
Target Start/End: Original strand, 33979463 - 33979898
Alignment:
| Q |
91 |
atcaaaaccaaacttcaacaaaatagtagtatatatataacaatctttctctatctcattcttacgggcaaaccctagaaaccaagaaacttatccaacc |
190 |
Q |
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| T |
33979463 |
atcaaaaccaa-cttcaacaaaatagtagtatatatataacaatctttctctatctcattcttacgggcaaaccctagaaaccaagaaacttgtccaacc |
33979561 |
T |
|
| Q |
191 |
ttaaacacctcaaaaacactatcaactaagcaaaaagaacactatatatccatcaaagttttaattagcatatgccatgatcaaaacaagcatcatcatc |
290 |
Q |
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| T |
33979562 |
ttaaacacctcaaaaacactatcaactaagcaaaaagaacactatatatccatcaacgttttaattagcatatgccatgatcaaaacaagcatcatcatc |
33979661 |
T |
|
| Q |
291 |
accttattagccatagccacatcttacttgttacttactccaaccaagaaatctagctattatcactctctctttatatccaattctctatcagataatg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33979662 |
accttattagccatagccacatcttacttgttacttactccaaccaagaaatctagctattatcactctctctttatatccaattctctatcagataatg |
33979761 |
T |
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| Q |
391 |
tctcagtatctaacaaccttaaagttctcactcatagaccccacatagcaggttctgaagccaacaatgaagctgcagcttatgttgtctcaatactcac |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33979762 |
tctcagtatctaacaaccttaaagttctcactcatagaccccacatagcaggttctgaagccaacaatgaagctgcagcttatgttgtctcaatactcac |
33979861 |
T |
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| Q |
491 |
ctcatctaacataccaactcatgtaacatcctatgat |
527 |
Q |
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| T |
33979862 |
ctcatctaacataccaactcatgtaacatcctatgat |
33979898 |
T |
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