View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0202_low_13 (Length: 268)
Name: NF0202_low_13
Description: NF0202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0202_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 29705087 - 29704867
Alignment:
| Q |
29 |
aaggttcatgaagattgtccacaaaaatcaactcacaagtattactgcatcgacgatgaatgttttttgtattactgggaaactccttgaataccagagg |
128 |
Q |
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| T |
29705087 |
aaggttcatgaagattgtccacaaaaatcgactcacaagtattactgcattgacgatgaatgttttttgtattactgggaagctccttgaataccagagt |
29704988 |
T |
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| Q |
129 |
gacacaataaattgcatgagtaccattctttagagagtatacttatgccatatagggattaataatgtgtttttacactaaaaaatctacgcaatgtaac |
228 |
Q |
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| T |
29704987 |
gacacaataaattgcatgagtaccattctttagagagtatacttatgccat----------ataatgtgtttttacactaaaaaatctacgcaatgtaac |
29704898 |
T |
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| Q |
229 |
ttgcttgataatcaacggtttccattcatct |
259 |
Q |
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| T |
29704897 |
ttgcttgattatcaacggtttcaattcatct |
29704867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 29683841 - 29683596
Alignment:
| Q |
29 |
aaggttcatgaagattgtccacaaaaatcaactcacaagtattactgcatcgacgatgaatgttttttgtattactgggaa---actccttga------- |
118 |
Q |
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| T |
29683841 |
aaggttcatgaagattgtccacaaaaatcaactcacaagtattactgcgttgacgataaatgttttttgtattactgggaaggcaagccttgatttagtt |
29683742 |
T |
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| Q |
119 |
ataccagagggacacaataaattgcatgagtaccattctttagagagtatacttatgccatatagggattaataatgtgtttttacacta-aaaaat-ct |
216 |
Q |
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| T |
29683741 |
atactagagtgacacaataaattgcatgagtatcatactttagaaagtatacttatgctatatggggattaataatgtgttcttacactataaaaatgct |
29683642 |
T |
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| Q |
217 |
acgcaatgtaac--ttgcttga-taatcaacggtttccattcatct |
259 |
Q |
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| T |
29683641 |
acgcaatgtaacttttgcttgattattttacggtttccattcatct |
29683596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 119 - 259
Target Start/End: Complemental strand, 29689026 - 29688882
Alignment:
| Q |
119 |
ataccagagggacacaataaattgcatgagtaccat-tctttagagagtatacttatgccatatagggattaataatgtgtttttacactaaaaaatcta |
217 |
Q |
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||||||||| ||||||||||||||||||| || ||| | ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29689026 |
ataccagagtgacacaataaattgcatgaatatcatatatttcgagagtatactcaagccatatagggattaataatgtgtttttacactaaaaaatcta |
29688927 |
T |
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| Q |
218 |
cgcaatgtaactt--gcttgataat-caacggtttccattcatct |
259 |
Q |
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| T |
29688926 |
tgcaatgtaacttttgctagattattctacggtttccattcatct |
29688882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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