View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0202_low_17 (Length: 210)
Name: NF0202_low_17
Description: NF0202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0202_low_17 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 52133674 - 52133790
Alignment:
| Q |
7 |
caattccagcagaagagacaggagctcttgggttcaagagtttgcatttagtttggttttgttccatataattatcagacagagtttcaacactatgata |
106 |
Q |
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| T |
52133674 |
caattccagcagaagagacaggagctattgggttcaagagttcctccttagtttggttttgttccatataattatcagacagagtttcaacactatgata |
52133773 |
T |
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| Q |
107 |
gaggttacctatgctac |
123 |
Q |
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| T |
52133774 |
gaggttacctatgctac |
52133790 |
T |
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Target: scaffold0150 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 8930 - 9000
Alignment:
| Q |
53 |
tttagtttggttttgttccatataattatcagacagagtttcaacactatgatagaggttacctatgctac |
123 |
Q |
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| T |
8930 |
tttagtttgttcttgttccatataattatcggacaaagtttcaacactgttatagagattaccaatgctac |
9000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 17020340 - 17020270
Alignment:
| Q |
53 |
tttagtttggttttgttccatataattatcagacagagtttcaacactatgatagaggttacctatgctac |
123 |
Q |
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| T |
17020340 |
tttagtttggtcttgttccatataatgatcggacaaagtttcaacactgttatagagattaccaatgctac |
17020270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 17550777 - 17550707
Alignment:
| Q |
53 |
tttagtttggttttgttccatataattatcagacagagtttcaacactatgatagaggttacctatgctac |
123 |
Q |
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||||||||||| |||||||||||||| ||| |||| |||||||||||| | |||||| ||||| ||||||| |
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| T |
17550777 |
tttagtttggtcttgttccatataatgatcggacaaagtttcaacactgttatagagattaccaatgctac |
17550707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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