View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0202_low_18 (Length: 203)
Name: NF0202_low_18
Description: NF0202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0202_low_18 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 52133790 - 52133674
Alignment:
| Q |
64 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgt |
163 |
Q |
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| T |
52133790 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaggaggaactcttgaacccaatagctcctgt |
52133691 |
T |
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| Q |
164 |
ctcttctgctggaattg |
180 |
Q |
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| T |
52133690 |
ctcttctgctggaattg |
52133674 |
T |
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Target: scaffold0150 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 9000 - 8928
Alignment:
| Q |
64 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
136 |
Q |
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||||||| ||||| |||||| | |||||||||||| |||| |||||||||||||||||| | ||||||||||| |
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| T |
9000 |
gtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaaaga |
8928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 17020270 - 17020342
Alignment:
| Q |
64 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
136 |
Q |
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| T |
17020270 |
gtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17020342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 17550707 - 17550779
Alignment:
| Q |
64 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
136 |
Q |
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||||||| ||||| |||||| | |||||||||||| |||| ||| |||||||||||||| ||||||||||||| |
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| T |
17550707 |
gtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17550779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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