View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0202_low_5 (Length: 350)

Name: NF0202_low_5
Description: NF0202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0202_low_5
NF0202_low_5
[»] chr3 (9 HSPs)
chr3 (25-322)||(34463245-34463543)
chr3 (103-315)||(34478448-34478660)
chr3 (110-312)||(27626584-27626786)
chr3 (110-312)||(34512356-34512558)
chr3 (26-81)||(34526865-34526920)
chr3 (103-159)||(34474494-34474550)
chr3 (26-81)||(27617470-27617525)
chr3 (26-81)||(34506255-34506310)
chr3 (115-163)||(34372000-34372048)
[»] chr1 (8 HSPs)
chr1 (231-302)||(21990376-21990447)
chr1 (231-298)||(21994334-21994401)
chr1 (231-298)||(22014048-22014115)
chr1 (234-315)||(21990252-21990333)
chr1 (234-315)||(21994141-21994222)
chr1 (234-315)||(22013855-22013936)
chr1 (231-302)||(22043983-22044054)
chr1 (234-315)||(22043789-22043872)
[»] chr7 (1 HSPs)
chr7 (103-148)||(15743910-15743955)
[»] chr6 (1 HSPs)
chr6 (103-148)||(1572356-1572401)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 25 - 322
Target Start/End: Original strand, 34463245 - 34463543
Alignment:
Q  25 catcaagctgatacagaaattttatgttcaatttcattagcaggtaagcaaggacatcattttatnnnnnnnnnnnnn-tactttatcaacaagtttttc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||    
T  34463245 catcaagctgatacagaaattttatgttcaatttcattagcaggtaagcaaggacatcattttataaaaacgaaaaaaatactttatcaacaagtttttc 34463344  T
Q  124 tgcacataaattataaaatgcaggatatcataccatagtatatgagacgtatgtctgatcttctgaacagtcaagcagtgcagaaacttcgatgtcaaaa 223  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34463345 tgaacataaattataaaatgcaggatatcataccatagtatatgagacgtatgtctgatcttctgaacagtcaagcagtgcggaaacttcgatgtcaaaa 34463444  T
Q  224 ttgcatttaggacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgttaggttcaaaatggaacatcat 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34463445 ttgcatttaggacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgttaggttcaaaatggaacatcat 34463543  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 103 - 315
Target Start/End: Original strand, 34478448 - 34478660
Alignment:
Q  103 tactttatcaacaagtttttctgcacataaattataaaatgcaggatatcataccatagtatatgagacgtatgtctgatcttctgaacagtcaagcagt 202  Q
    ||||||||||| ||||||||  | |||||||||||||||| |||||  |||||||||||||||  || | |||||||||||||| |||| || | |||||    
T  34478448 tactttatcaataagtttttaggaacataaattataaaatccaggacgtcataccatagtatacaagtcatatgtctgatcttccgaacggtgacgcagt 34478547  T
Q  203 gcagaaacttcgatgtcaaaattgcatttaggacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgtta 302  Q
    ||||||||||| ||||||||| |||||   ||||||||| ||||  ||||||||| || || ||||||||| |||||| | |||| ||||||||||||||    
T  34478548 gcagaaacttcaatgtcaaaagtgcatgcgggacattttatagcacatggagaatcactatgaagatcaataggattggaaattgaatcaccttctgtta 34478647  T
Q  303 ggttcaaaatgga 315  Q
    |||| ||||||||    
T  34478648 ggtttaaaatgga 34478660  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 110 - 312
Target Start/End: Original strand, 27626584 - 27626786
Alignment:
Q  110 tcaacaagtttttctgcacataaattataaaatgcaggatatcataccatagtatatgagacgtatgtctgatcttctgaacagtcaagcagtgcagaaa 209  Q
    |||| ||||||||||| |||||||||||||||  |||||  |||| |||||||||||||| |||||||||||||||| |||| |||| | ||||||||||    
T  27626584 tcaataagtttttctgaacataaattataaaaaccaggaggtcatgccatagtatatgagtcgtatgtctgatcttccgaacggtcacgtagtgcagaaa 27626683  T
Q  210 cttcgatgtcaaaattgcatttaggacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgttaggttcaa 309  Q
    |||| ||  |||||||| || |  | |||||| |||| |||| ||||| |||||||||||||||  |||||||||||| ||  ||| |||||||||||||    
T  27626684 cttcaattacaaaattgaatgtgaggcattttgtagcagatgaagaatcaccatcaagatcaataagattgaagattgaattgcctcctgttaggttcaa 27626783  T
Q  310 aat 312  Q
    |||    
T  27626784 aat 27626786  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 110 - 312
Target Start/End: Original strand, 34512356 - 34512558
Alignment:
Q  110 tcaacaagtttttctgcacataaattataaaatgcaggatatcataccatagtatatgagacgtatgtctgatcttctgaacagtcaagcagtgcagaaa 209  Q
    |||| ||||||||||| |||||||||||||||  |||||  |||| |||||||||||||| |||||||||||||||| |||| |||| | ||||||||||    
T  34512356 tcaataagtttttctgaacataaattataaaaaccaggaggtcatgccatagtatatgagtcgtatgtctgatcttccgaacggtcacgtagtgcagaaa 34512455  T
Q  210 cttcgatgtcaaaattgcatttaggacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgttaggttcaa 309  Q
    |||| ||  |||||||| || |  | |||||| |||| |||| ||||| |||||||||||||||  |||||||||||| ||  ||| |||||||||||||    
T  34512456 cttcaattacaaaattgaatgtgaggcattttgtagcagatgaagaatcaccatcaagatcaataagattgaagattgaattgcctcctgttaggttcaa 34512555  T
Q  310 aat 312  Q
    |||    
T  34512556 aat 34512558  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 34526865 - 34526920
Alignment:
Q  26 atcaagctgatacagaaattttatgttcaatttcattagcaggtaagcaaggacat 81  Q
    |||||||||||||| ||||| | ||||||||||||||||||| |||||||||||||    
T  34526865 atcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacat 34526920  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 34474494 - 34474550
Alignment:
Q  103 tactttatcaacaagtttttctgcacataaattataaaatgcaggatatcataccat 159  Q
    ||||||||||||||||||||||| |||||||||||||||| || ||  |||||||||    
T  34474494 tactttatcaacaagtttttctgaacataaattataaaatccacgaggtcataccat 34474550  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 27617470 - 27617525
Alignment:
Q  26 atcaagctgatacagaaattttatgttcaatttcattagcaggtaagcaaggacat 81  Q
    |||||||||| ||| ||||||| | ||||||||||||||||| |||||||||||||    
T  27617470 atcaagctgacacataaattttcttttcaatttcattagcagctaagcaaggacat 27617525  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 34506255 - 34506310
Alignment:
Q  26 atcaagctgatacagaaattttatgttcaatttcattagcaggtaagcaaggacat 81  Q
    ||||| |||| ||||||||||| | ||||||||||||||||| |||||||||||||    
T  34506255 atcaaactgacacagaaattttcttttcaatttcattagcagctaagcaaggacat 34506310  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 34372048 - 34372000
Alignment:
Q  115 aagtttttctgcacataaattataaaatgcaggatatcataccatagta 163  Q
    ||||||||||| |||||||||||||||| |||||  |||||||||||||    
T  34372048 aagtttttctgaacataaattataaaatacaggaggtcataccatagta 34372000  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 21990376 - 21990447
Alignment:
Q  231 taggacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgtta 302  Q
    ||||| ||||| |||| |||||||||| || |||||||||||| ||||||||||||| ||||||||||||||    
T  21990376 taggatattttgtagcagatggagaatcactatcaagatcaataggattgaagattgaatcaccttctgtta 21990447  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 21994334 - 21994401
Alignment:
Q  231 taggacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttct 298  Q
    ||||||||||| |||| |||||||||| || |||||||||||| ||||||||||||| ||||||||||    
T  21994334 taggacattttgtagcagatggagaatcactatcaagatcaataggattgaagattgaatcaccttct 21994401  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 22014048 - 22014115
Alignment:
Q  231 taggacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttct 298  Q
    ||||||||||| |||| |||||||||| || |||||||||||| ||||||||||||| ||||||||||    
T  22014048 taggacattttgtagcagatggagaatcactatcaagatcaataggattgaagattgaatcaccttct 22014115  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 21990333 - 21990252
Alignment:
Q  234 gacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgttaggttcaaaatgga 315  Q
    |||||||| ||||  | ||||||| |||||||| |||||| |||||||| |||| | |||||||||||||| | ||||||||    
T  21990333 gacattttgtagcacacggagaatcaccatcaaaatcaataggattgaatattgaaccaccttctgttaggattaaaatgga 21990252  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 21994222 - 21994141
Alignment:
Q  234 gacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgttaggttcaaaatgga 315  Q
    |||||||| ||||  | ||||||| |||||||| |||||| ||||||||||||| |  ||||||||||||| | ||||||||    
T  21994222 gacattttgtagcacacggagaatcaccatcaaaatcaataggattgaagattgaacgaccttctgttaggattaaaatgga 21994141  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 22013936 - 22013855
Alignment:
Q  234 gacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgttaggttcaaaatgga 315  Q
    |||||||| ||||  | ||||||| |||||||| |||||| ||||||||||||| |  ||||||||||||| | ||||||||    
T  22013936 gacattttgtagcacacggagaatcaccatcaaaatcaataggattgaagattgaacgaccttctgttaggattaaaatgga 22013855  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 22043983 - 22044054
Alignment:
Q  231 taggacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgtatcaccttctgtta 302  Q
    ||||||||||| ||||  ||||||||| || || ||||||||| |||||||| |||| |||||||| |||||    
T  22043983 taggacattttgtagcaaatggagaatcactataaagatcaataggattgaatattgaatcaccttatgtta 22044054  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 22043872 - 22043789
Alignment:
Q  234 gacattttttagctgatggagaataaccatcaagatcaatgggattgaagattgta--tcaccttctgttaggttcaaaatgga 315  Q
    |||||||| ||||  | ||||||| |||||||| |||||| ||||||||||||| |   |||||||||||||| | ||||||||    
T  22043872 gacattttgtagcacacggagaatcaccatcaaaatcaataggattgaagattgaaccacaccttctgttaggattaaaatgga 22043789  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 15743955 - 15743910
Alignment:
Q  103 tactttatcaacaagtttttctgcacataaattataaaatgcagga 148  Q
    ||||||||||  ||||||| ||| ||||||||||||||||||||||    
T  15743955 tactttatcactaagttttgctgaacataaattataaaatgcagga 15743910  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 1572356 - 1572401
Alignment:
Q  103 tactttatcaacaagtttttctgcacataaattataaaatgcagga 148  Q
    ||||||||||  ||||||| ||| ||||||||||||||||||||||    
T  1572356 tactttatcactaagttttgctgaacataaattataaaatgcagga 1572401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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