View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0202_low_8 (Length: 319)
Name: NF0202_low_8
Description: NF0202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0202_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 88 - 252
Target Start/End: Original strand, 41531161 - 41531325
Alignment:
| Q |
88 |
gtctgatcagcacatctttgtgaacaaacgacatgtaagtaaccaagtatgcaactacttccaaagggaaaaacgtgtgtagaaactacctcatcctcat |
187 |
Q |
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| T |
41531161 |
gtctgatcagcacatctttgtgaacaaacgacatgtaagtaaccaagtatgcaactacttccaaagggaaaaacgtgtgtagaaactacctcatcctcat |
41531260 |
T |
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| Q |
188 |
gcctactattgtgttaccattggaatcttctatctataaattgaaagcaaaacattttattcatc |
252 |
Q |
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| T |
41531261 |
gcccactattgtgttaccattggaatcttctatctataaattgaaagcaaaacattttattcatc |
41531325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 41232032 - 41232075
Alignment:
| Q |
132 |
aagtatgcaactacttccaaagggaaaaacgtgtgtagaaacta |
175 |
Q |
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| T |
41232032 |
aagtatgcaactacttccaaagggaaaaaagtgtgcataaacta |
41232075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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