View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0203_high_4 (Length: 262)
Name: NF0203_high_4
Description: NF0203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0203_high_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 49977071 - 49977303
Alignment:
| Q |
30 |
attgggaatgaagttggtttactttatttaattaaggtaaaggaagggtctcatcaaagttgcttaaattggatatttggttacaacagttacaggttat |
129 |
Q |
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| T |
49977071 |
attgggaatgaagttggtttactttatttaattaaggtaaaggaagggtctcatcaaagttgcttaaattggatatttggttacaacagttacaggttat |
49977170 |
T |
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| Q |
130 |
aaggaaaaggaaaacggcgaagatgatgatgatagaaaagacgagaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttg |
229 |
Q |
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| T |
49977171 |
aaggaaaaggaaaacggcgaagatgatgatgatagaaaagacgagaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttg |
49977270 |
T |
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| Q |
230 |
ggggacacatgaaccgtcatcgccaaggctagc |
262 |
Q |
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| T |
49977271 |
ggggacacatgaaccgtcatcgccaaggctagc |
49977303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 49953557 - 49953469
Alignment:
| Q |
174 |
gaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaaggctagc |
262 |
Q |
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| T |
49953557 |
gaaggtctatgaatgtagattctgttccctcaagttctgtaaatctcaggctcttgggggacacatgaaccgtcaccgccaaggctagc |
49953469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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