View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0203_low_2 (Length: 416)
Name: NF0203_low_2
Description: NF0203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0203_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 4160037 - 4159629
Alignment:
| Q |
1 |
caaatcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagtaaatagagtgagatcttcctca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4160037 |
caaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagcaaatagagtgagatcttcctca |
4159938 |
T |
|
| Q |
101 |
taaacccatttctttaacttatgaaatgaagctgaaagtgttggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaa |
200 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4159937 |
taaacccatttctttaagttatgaaatgaagttgaaagtgttggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaa |
4159838 |
T |
|
| Q |
201 |
gctctgaagcaacagtgagagcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgag |
300 |
Q |
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| T |
4159837 |
gctctgaagcaacagtgagagcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgag |
4159738 |
T |
|
| Q |
301 |
acgctgcacgttatcgactttggttgatggaatttgaagaattgaaactaagttggaaagagtaattggtttgccatgattgtggataatatttggtatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4159737 |
acgctgcacgttatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtggataatatttggtatg |
4159638 |
T |
|
| Q |
401 |
ttcatctca |
409 |
Q |
| |
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||||||||| |
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| T |
4159637 |
ttcatctca |
4159629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 6 - 401
Target Start/End: Original strand, 4171970 - 4172365
Alignment:
| Q |
6 |
catcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagtaaatagagtgagatcttcctcataaac |
105 |
Q |
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| T |
4171970 |
catcattgaacaatctattatattcaggatttttgttaagaaactcccataaatcacatcctaaagaggtagcaaagagggtgagatcttcctcataaat |
4172069 |
T |
|
| Q |
106 |
ccatttctttaacttatgaaatgaagctgaaagtgttggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaagctct |
205 |
Q |
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||| ||||| || |||||||||||| | || | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4172070 |
ccacttcttgaaattatgaaatgaaacattaaatttaggatcaagaacacactcaaccattggagctaaacaaagttcagtccctttaacaagaagctct |
4172169 |
T |
|
| Q |
206 |
gaagcaacagtgagagcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgct |
305 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
4172170 |
gaagtaactgtgagagcataagcttcttcttcattttccaattcttgattcgttactatctcaaagaatccattgtgtgcaaggagacgcatgagacgct |
4172269 |
T |
|
| Q |
306 |
gcacgttatcgactttggttgatggaatttgaagaattgaaactaagttggaaagagtaattggtttgccatgattgtggataatatttggtatgt |
401 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
4172270 |
gcacgttatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatgt |
4172365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 21 - 405
Target Start/End: Original strand, 4177608 - 4177977
Alignment:
| Q |
21 |
tattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagtaaatagagtgagatcttcctcataaacccatttctttaactt |
120 |
Q |
| |
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||||||| ||||| ||||| | |||||| ||||| ||| || | |||||| | ||| ||| || || |||||||||||||||| ||||||||| | || |
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| T |
4177608 |
tattatattcaggatttttatcaagaaaatcccaaaaaccagaccctaaagtaacaccaaagagtgtaagatcttcctcataaatccatttcttcagctc |
4177707 |
T |
|
| Q |
121 |
atgaaatgaagctgaaagtgttggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaagctctgaagcaacagtgaga |
220 |
Q |
| |
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|||| | ||| | ||||| ||||||||||||||||||||||||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||||| |
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| T |
4177708 |
atgatacgaacccgaaagagttggatcaagaacacactcaaccattggtgctaaacaaagatcactacctctaacaagaagctctgaagcaacagtgaga |
4177807 |
T |
|
| Q |
221 |
gcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgctgcacgttatcgactt |
320 |
Q |
| |
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||||||| |||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| | | || |
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| T |
4177808 |
gcataagactcttcttctttt---------------gtaattatctcaaagaatccgttgtgcgcgaggtaacgcatgagacgccgcacgttacctattt |
4177892 |
T |
|
| Q |
321 |
tggttgatggaatttgaagaattgaaactaagttggaaagagtaattggtttgccatgattgtggataatatttggtatgttcat |
405 |
Q |
| |
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| | ||||||| |||||||||||||||||| || ||||| | ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4177893 |
tcgacgatggaacttgaagaattgaaactaaatttgaaagtgaaattggtttgccatgattgtgaataatatttggtatgttcat |
4177977 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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