View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0203_low_3 (Length: 396)
Name: NF0203_low_3
Description: NF0203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0203_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 226 - 396
Target Start/End: Complemental strand, 29864072 - 29863898
Alignment:
| Q |
226 |
tcatacctatcattaatatgaatcatgctagccttgtataatttatgtcataactgcaaagatattttagaatttagtactactgttttgtatgttgaat |
325 |
Q |
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| T |
29864072 |
tcatacctatcattaatatgaatcatgctagccttgtataatttatgtcataactgcaaagatattttagaatttagtactactgttttgtatgttgaat |
29863973 |
T |
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| Q |
326 |
attatattttatgcact----taatctaaccaaaagaatcttacataaatcttacctaaaggatagcattacatt |
396 |
Q |
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| T |
29863972 |
attatattttatgcacttaattaatctaaccaaaagaatcttacataaatcttacctaaaggataacattacatt |
29863898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 29864277 - 29864185
Alignment:
| Q |
24 |
tcatcatcgaacttacatttagattagtttgttgtgagcctctcatgcaatcatgtgcagagtactaatcactatcattacctcttaaatctc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29864277 |
tcatcatcgaacttacatttagattagtttgttgtgagcctctcatgcaatcatgtgcagagtactaatcactatcattacctcttaaatctc |
29864185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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