View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0203_low_5 (Length: 352)
Name: NF0203_low_5
Description: NF0203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0203_low_5 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 57 - 352
Target Start/End: Original strand, 10254710 - 10255005
Alignment:
| Q |
57 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttggcgaactccctc |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10254710 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctc |
10254809 |
T |
|
| Q |
157 |
caacacaatgtcaaatcatcaaaggtacactcccgccgtcacttaacggtgcttacataagaaacggaccaaacccacagttccttccacgtggacccta |
256 |
Q |
| |
|
|||||||||| || |||| ||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254810 |
caacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataagaaacggaccaaacccacagttccttccacgtggacccta |
10254909 |
T |
|
| Q |
257 |
ccacctcttcgacggtgacggcatgcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaa |
352 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254910 |
ccacctcttcgacggtgatggcatgcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaa |
10255005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 57 - 352
Target Start/End: Complemental strand, 10231115 - 10230820
Alignment:
| Q |
57 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttggcgaactccctc |
156 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
10231115 |
gacattatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtcctagacgaactccctc |
10231016 |
T |
|
| Q |
157 |
caacacaatgtcaaatcatcaaaggtacactcccgccgtcacttaacggtgcttacataagaaacggaccaaacccacagttccttccacgtggacccta |
256 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231015 |
caacacaatgtgtaatcatcaaaggtacactcccgccgtcactttacggtgcttacataagaaacggaccaaacccacagttccttccacgtggacccta |
10230916 |
T |
|
| Q |
257 |
ccacctcttcgacggtgacggcatgcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaa |
352 |
Q |
| |
|
||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || |||| ||||| ||||| |
|
|
| T |
10230915 |
ccatctctttgacggtgacggcatgcttcatgccattacaatctcaaacgggaaagccacactatgtagccgttatgtaaaaacctacaagtacaa |
10230820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 57 - 352
Target Start/End: Complemental strand, 10239895 - 10239600
Alignment:
| Q |
57 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttggcgaactccctc |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10239895 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctc |
10239796 |
T |
|
| Q |
157 |
caacacaatgtcaaatcatcaaaggtacactcccgccgtcacttaacggtgcttacataagaaacggaccaaacccacagttccttccacgtggacccta |
256 |
Q |
| |
|
|||||||||| || |||| ||||| ||||| || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
10239795 |
caacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataagaaacggaccaaaccctcagttccttccacgtggacctta |
10239696 |
T |
|
| Q |
257 |
ccacctcttcgacggtgacggcatgcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaa |
352 |
Q |
| |
|
||| ||||| |||||||||||||||||||| || ||| |||| ||||||||||||| ||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
10239695 |
ccatctctttgacggtgacggcatgcttcatgctgttaaaatcacaaacggaaaagccacactatgtagccgttacgttcaaacctataaatacaa |
10239600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1663 times since January 2019
Visitors: 2392