View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0203_low_9 (Length: 262)
Name: NF0203_low_9
Description: NF0203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0203_low_9
[» ] chr1 (2 HSPs)
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 49977071 - 49977303
Alignment:
Q
30
attgggaatgaagttggtttactttatttaattaaggtaaaggaagggtctcatcaaagttgcttaaattggatatttggttacaacagttacaggttat
129
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
49977071
attgggaatgaagttggtttactttatttaattaaggtaaaggaagggtctcatcaaagttgcttaaattggatatttggttacaacagttacaggttat
49977170
T
Q
130
aaggaaaaggaaaacggcgaagatgatgatgatagaaaagacgagaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttg
229
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
49977171
aaggaaaaggaaaacggcgaagatgatgatgatagaaaagacgagaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttg
49977270
T
Q
230
ggggacacatgaaccgtcatcgccaaggctagc
262
Q
|||||||||||||||||||||||||||||||||
T
49977271
ggggacacatgaaccgtcatcgccaaggctagc
49977303
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 49953557 - 49953469
Alignment:
Q
174
gaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaaggctagc
262
Q
||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||
T
49953557
gaaggtctatgaatgtagattctgttccctcaagttctgtaaatctcaggctcttgggggacacatgaaccgtcaccgccaaggctagc
49953469
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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