View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0204-INSERTION1 (Length: 508)
Name: NF0204-INSERTION1
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0204-INSERTION1 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 41842990 - 41842669
Alignment:
| Q |
8 |
attatgaggactagaccaagaggctcagcaacaatttctgcacttgaaagtagtgctatttggggcagtttagcctgttaagttgaaaataataaggcat |
107 |
Q |
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| T |
41842990 |
attatgaggactagaccaagaggctcagcaacaatttctgcacttgaaagtagtgctatttggggcagtttagcctgttaagttgaaaataataaggcat |
41842891 |
T |
|
| Q |
108 |
aacaataaagtatatagttatggaattctttaatttcatgtaaaagtatggtgcaattgttcttattttcaataaactaaatataatggaaatataaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41842890 |
aacaataaagtatatagttatggaattctttaatttcatgtaaaagtatggtgcaattgttcttattttcaataaactaagtataatggaaatataaaat |
41842791 |
T |
|
| Q |
208 |
atacttttctcatttgttttgcttgtgttgtacatatataaactaacctctttaccagccatccattttttgaaggactttattgccaaatcaatggann |
307 |
Q |
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| T |
41842790 |
atacttttctcatttgttttgcatgtgttgtacatatataaactaacctctttaccagccatccattttttgaaggactttattgccaaatcaatggatt |
41842691 |
T |
|
| Q |
308 |
nnnnnaacgttccaacctgcaa |
329 |
Q |
| |
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||||||||||||||||| |
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| T |
41842690 |
tttttaacgttccaacctgcaa |
41842669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 400 - 508
Target Start/End: Complemental strand, 41842606 - 41842498
Alignment:
| Q |
400 |
ctactataagagtgtagcaagtagaaaaagaaacacacctcatctctaaaagcctcaacatgatgcttccctaaatccttcttgagggccttcaagattt |
499 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41842606 |
ctactataagagtgtagcaagtagaataagaaacacacctcatctctaaaagcctcaacatgatgcttccctaaatccttcttgagggccttcaagattt |
41842507 |
T |
|
| Q |
500 |
cttcctcat |
508 |
Q |
| |
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||||||||| |
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| T |
41842506 |
cttcctcat |
41842498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 24399135 - 24399079
Alignment:
| Q |
11 |
atgaggactagaccaagaggctcagcaacaatttctgcacttgaaagtagtgctatt |
67 |
Q |
| |
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|||||||| ||||| | ||||||| ||||||||||||||||||||| | ||||||| |
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| T |
24399135 |
atgaggacgagacccaaaggctcatgaacaatttctgcacttgaaagcaatgctatt |
24399079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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