View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0204-INSERTION10 (Length: 472)
Name: NF0204-INSERTION10
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0204-INSERTION10 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 122 - 324
Target Start/End: Original strand, 14052753 - 14052955
Alignment:
| Q |
122 |
gatgaagcacgtaattagggtgattagcacttcttaatttacttaactatgattatgcttcgtgtgaaacaaaagataaaaaatactactccgttaagtg |
221 |
Q |
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| T |
14052753 |
gatgaagcacgtaattagggtgattagcacttcttaatttacttaactatgattatgcttcgtgtgaaacaaaagataaaaaatactgctccgttaagtg |
14052852 |
T |
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| Q |
222 |
aacatttaaatcgtaccaccttcacgtggtatttcaaattccttcattttcgggctcatttcttcgatgcagtaagtggtcaatggtaaatgataaatga |
321 |
Q |
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| T |
14052853 |
aacatttaaatcgtaccaccttcacgtggtatttcaaattccttcattttcgggctcatttcttcgatgcagtaagtggtcgatggtcaatgataaatga |
14052952 |
T |
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| Q |
322 |
ata |
324 |
Q |
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||| |
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| T |
14052953 |
ata |
14052955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 14053101 - 14053187
Alignment:
| Q |
323 |
tatttaagaatgaatgaaaagtggaagcacgtgtctttcctcgttttctctgtatttttgtccaacatgcatcgatgaagtcattgtt |
410 |
Q |
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| T |
14053101 |
tatttaagaatgaatgaaaagtggaagcacgtgtgtttcctcgttttctct-tatttttgtccaacatgcatcgatgaagtcattgtt |
14053187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 14055511 - 14055568
Alignment:
| Q |
415 |
tcgtggatattatagacacaatttattctcatacacctttgtatatctcattcattaa |
472 |
Q |
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| T |
14055511 |
tcgtggatattatagacactatttattctcatacacctttgtatacctcattcattaa |
14055568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 14052693 - 14052735
Alignment:
| Q |
58 |
gacgatgcactgctgaacttctaaagcacaaccttaatatatt |
100 |
Q |
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| T |
14052693 |
gacgatgcactgctgaacttctaaagcacaaccttaatatatt |
14052735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 41824052 - 41824007
Alignment:
| Q |
426 |
atagacacaatttattctcatacacctttgtatatctcattcatta |
471 |
Q |
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| T |
41824052 |
atagacaccatttattctcatacacctttgtacacctcatgcatta |
41824007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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