View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0204-INSERTION3 (Length: 588)

Name: NF0204-INSERTION3
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0204-INSERTION3
NF0204-INSERTION3
[»] chr3 (15 HSPs)
chr3 (43-407)||(1834723-1835083)
chr3 (506-588)||(1835565-1835647)
chr3 (332-435)||(6247658-6247763)
chr3 (337-435)||(50296484-50296584)
chr3 (552-588)||(41366581-41366617)
chr3 (445-477)||(50296727-50296759)
chr3 (399-440)||(1835464-1835508)
chr3 (116-153)||(11819516-11819553)
chr3 (116-153)||(13701662-13701699)
chr3 (116-153)||(14585894-14585931)
chr3 (116-153)||(19645622-19645659)
chr3 (116-153)||(24483356-24483393)
chr3 (116-153)||(49627764-49627801)
chr3 (116-153)||(55090359-55090396)
chr3 (116-153)||(55455294-55455331)
[»] chr2 (17 HSPs)
chr2 (332-435)||(3453608-3453713)
chr2 (116-153)||(12890769-12890806)
chr2 (445-477)||(3453860-3453892)
chr2 (116-153)||(3527418-3527455)
chr2 (116-153)||(4732494-4732531)
chr2 (116-153)||(13878661-13878698)
chr2 (116-153)||(14018786-14018823)
chr2 (116-153)||(16136510-16136547)
chr2 (116-153)||(17267778-17267815)
chr2 (116-153)||(20560785-20560822)
chr2 (116-153)||(25068273-25068310)
chr2 (116-153)||(28230749-28230786)
chr2 (116-153)||(29543225-29543262)
chr2 (116-153)||(33012480-33012517)
chr2 (116-153)||(35333937-35333974)
chr2 (116-153)||(36868440-36868477)
chr2 (116-153)||(43696300-43696337)
[»] chr4 (14 HSPs)
chr4 (337-435)||(39701802-39701902)
chr4 (337-421)||(34370461-34370546)
chr4 (445-477)||(34370271-34370303)
chr4 (116-153)||(7084374-7084411)
chr4 (116-153)||(8517111-8517148)
chr4 (116-153)||(13965975-13966012)
chr4 (116-153)||(14346842-14346879)
chr4 (116-153)||(24826071-24826108)
chr4 (116-153)||(38435009-38435046)
chr4 (116-153)||(42197985-42198022)
chr4 (116-153)||(43244033-43244070)
chr4 (116-153)||(45350722-45350759)
chr4 (116-153)||(45360201-45360238)
chr4 (116-153)||(55600198-55600235)
[»] chr6 (10 HSPs)
chr6 (332-435)||(14114208-14114313)
chr6 (116-153)||(31936285-31936322)
chr6 (445-477)||(14114030-14114062)
chr6 (116-153)||(4660860-4660897)
chr6 (116-153)||(5146358-5146395)
chr6 (116-153)||(12653970-12654007)
chr6 (116-153)||(15589777-15589814)
chr6 (116-153)||(19402504-19402541)
chr6 (116-153)||(23654681-23654718)
chr6 (116-153)||(30813489-30813526)
[»] scaffold0536 (1 HSPs)
scaffold0536 (116-153)||(3327-3364)
[»] scaffold0155 (1 HSPs)
scaffold0155 (116-153)||(35507-35544)
[»] chr8 (4 HSPs)
chr8 (116-153)||(2234130-2234167)
chr8 (116-153)||(24790830-24790867)
chr8 (116-153)||(31202880-31202917)
chr8 (116-153)||(37613068-37613105)
[»] chr7 (12 HSPs)
chr7 (116-153)||(2623024-2623061)
chr7 (116-153)||(4621032-4621069)
chr7 (116-153)||(6667827-6667864)
chr7 (116-153)||(21991094-21991131)
chr7 (116-153)||(32741175-32741212)
chr7 (116-153)||(38277229-38277266)
chr7 (116-153)||(39707700-39707737)
chr7 (116-153)||(41288388-41288425)
chr7 (116-153)||(44482530-44482567)
chr7 (116-153)||(48643478-48643515)
chr7 (116-152)||(9785750-9785786)
chr7 (117-153)||(37375709-37375745)
[»] chr5 (8 HSPs)
chr5 (116-153)||(9196683-9196720)
chr5 (116-153)||(17331760-17331797)
chr5 (116-153)||(23881768-23881805)
chr5 (116-153)||(34431496-34431533)
chr5 (116-153)||(39531060-39531097)
chr5 (116-153)||(42505065-42505102)
chr5 (118-154)||(42396164-42396200)
chr5 (445-473)||(42876537-42876565)
[»] chr1 (7 HSPs)
chr1 (116-153)||(4882029-4882066)
chr1 (116-153)||(12872038-12872075)
chr1 (116-153)||(13152859-13152896)
chr1 (116-153)||(28677791-28677828)
chr1 (116-153)||(29205700-29205737)
chr1 (116-153)||(32784511-32784548)
chr1 (116-153)||(44517580-44517617)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 43 - 407
Target Start/End: Original strand, 1834723 - 1835083
Alignment:
Q  43 gtttgtgtatatgcttatctattgcgtttaattgtatgtaaaaaa-gttttgattttggcannnnnnnnnnnnnacaaaaataaacgatattcgttaatt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||             ||||||||||||||||||||||||||    
T  1834723 gtttgtgtatatgcttatctattgcgtttaattgtatgtaaaaaatgttttgattttggcatatattttttttgacaaaaataaacgatattcgttaatt 1834822  T
Q  142 caaattgatagaaatgatggatctgcgaaagtagcaaaagtagtaattttgatccccctttttnnnnnnntggaaaaagtcacccctcatatttaaccca 241  Q
    ||||| ||||||||||||||||||||||||||||         |||||| || |||||||||        ||| ||||||||||||||||||||| ||||    
T  1834823 caaatcgatagaaatgatggatctgcgaaagtag---------taatttaga-cccccttttcaaaaaaatggcaaaagtcacccctcatatttagccca 1834912  T
Q  242 ttttacaaaacaacaattttgatttggtcaaatata----gcacgccacctaatttaaaaaatttccaacggtataatttggaatttaaaatagaaacta 337  Q
    ||||| |||||| ||||||||| ||||||||  |||    | || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1834913 ttttataaaacatcaattttgacttggtcaaggatacatggtaccccacctaatttaaaaaatttccaaccgtataatttggaatttaaaatagaaacta 1835012  T
Q  338 ttccttacccacaaatcaaaattctaattaaaaatcagaaacaaactaatgggtc-aaatcatagattttg 407  Q
    |||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||    
T  1835013 ttccttacccacaaatcaaaatcctaattaaaaatgacaaacaaactaatgggtcaaaatcatagattttg 1835083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 506 - 588
Target Start/End: Original strand, 1835565 - 1835647
Alignment:
Q  506 actgtacatcgtgaccgtcttcttcttagattcaaattccaaactcttttttgaagattttcaagctcaattgtgctttctgt 588  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1835565 actgtatatcgtgaccgtcttcttctcagattcaaattccaaactcttttttgaagattttcaagctcaattgtgctttctgt 1835647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 332 - 435
Target Start/End: Original strand, 6247658 - 6247763
Alignment:
Q  332 aaactattccttacccacaaatcaaaattctaattaaaaatcagaaacaaactaatgggtc-aaatcatagattttgaaactttctc-aaaacccctcct 429  Q
    |||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  6247658 aaaccattccttactcacaaatcaaaatcctaattaaaaatcacaaacaaactaatgggtcaaaatcatagattttgaaactttctcaaaaacccatcct 6247757  T
Q  430 ttgtac 435  Q
    ||||||    
T  6247758 ttgtac 6247763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 50296484 - 50296584
Alignment:
Q  337 attccttacccacaaatcaaaattctaattaaaaatcagaaacaaactaatgggtc-aaatcatagattttgaaactttctc-aaaacccctcctttgta 434  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||||||||    
T  50296484 attccttactcacaaatcaaaatcctaattaaaaatcacaaacaaactaatgggtcaaaatcatagaatttgaaactttctcaaaaacccatcctttgta 50296583  T
Q  435 c 435  Q
    |    
T  50296584 c 50296584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 552 - 588
Target Start/End: Complemental strand, 41366617 - 41366581
Alignment:
Q  552 ttttttgaagattttcaagctcaattgtgctttctgt 588  Q
    |||||||||||||||||||||||||||||||||||||    
T  41366617 ttttttgaagattttcaagctcaattgtgctttctgt 41366581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 477
Target Start/End: Original strand, 50296727 - 50296759
Alignment:
Q  445 agttgttggagaaagagatagatccaattccga 477  Q
    |||||||||||||||||||||||||||||||||    
T  50296727 agttgttggagaaagagatagatccaattccga 50296759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 1835464 - 1835508
Alignment:
Q  399 tagattttgaaactttctcaaaac---ccctcctttgtacgatag 440  Q
    ||||||||||||||||||||||||   ||||||||||||||||||    
T  1835464 tagattttgaaactttctcaaaacccaccctcctttgtacgatag 1835508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 11819553 - 11819516
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  11819553 acaaaaataaacgatattcattcattcaaattgataga 11819516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 13701662 - 13701699
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  13701662 acaaaaataaacgatattcattcattcaaattgataga 13701699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 14585931 - 14585894
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  14585931 acaaaaataaacgatattcattcattcaaattgataga 14585894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 19645659 - 19645622
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  19645659 acaaaaataaacgatattcattcattcaaattgataga 19645622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 24483356 - 24483393
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  24483356 acaaaaataaacgatattcattcattcaaattgataga 24483393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 49627764 - 49627801
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  49627764 acaaaaataaacgatattcattcattcaaattgataga 49627801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 55090359 - 55090396
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  55090359 acaaaaataaacgatattcattcattcaaattgataga 55090396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 55455331 - 55455294
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  55455331 acaaaaataaacgatattcattcattcaaattgataga 55455294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 332 - 435
Target Start/End: Original strand, 3453608 - 3453713
Alignment:
Q  332 aaactattccttacccacaaatcaaaattctaattaaaaatcagaaacaaactaatgggtc-aaatcatagattttgaaactttctc-aaaacccctcct 429  Q
    |||| |||| |||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||||| ||||    
T  3453608 aaaccattcattactcacaaatcaaaatcctaattaaaaatcacaaacaaactaatgggtcaaaatcatagaatttgaaactttctcaaaaacccatcct 3453707  T
Q  430 ttgtac 435  Q
    ||||||    
T  3453708 ttgtac 3453713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 12890769 - 12890806
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12890769 acaaaaataaacgatattcattaattcaaattgataga 12890806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 477
Target Start/End: Original strand, 3453860 - 3453892
Alignment:
Q  445 agttgttggagaaagagatagatccaattccga 477  Q
    |||||||||||||||||||||||||||||||||    
T  3453860 agttgttggagaaagagatagatccaattccga 3453892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 3527455 - 3527418
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  3527455 acaaaaataaacgatattcattcattcaaattgataga 3527418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 4732531 - 4732494
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  4732531 acaataataaacgatattcattaattcaaattgataga 4732494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 13878661 - 13878698
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  13878661 acaaaaataaacgatattcattcattcaaattgataga 13878698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 14018786 - 14018823
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  14018786 acaaaaataaacgatattcattcattcaaattgataga 14018823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 16136547 - 16136510
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  16136547 acaaaaataaacgatattcattcattcaaattgataga 16136510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 17267778 - 17267815
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  17267778 acaaaaataaacgatattcatttattcaaattgataga 17267815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 20560785 - 20560822
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  20560785 acaaaaataaacgatattcattcattcaaattgataga 20560822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 25068310 - 25068273
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  25068310 acaaaaataaacgatattcattcattcaaattgataga 25068273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 28230749 - 28230786
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  28230749 acaaaaataaacgatattcgttcattcaaattgttaga 28230786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 29543262 - 29543225
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  29543262 acaaaaataaacgatattcattcattcaaattgataga 29543225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 33012517 - 33012480
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  33012517 acaaaaataaacgatattcattcattcaaattgataga 33012480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 35333974 - 35333937
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  35333974 acaaaaataaacgatattcattcattcaaattgataga 35333937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 36868477 - 36868440
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  36868477 acaaaaataaacgatattcattcattcaaattgataga 36868440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 43696337 - 43696300
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  43696337 acaaaaataaacgatattcattcattcaaattgataga 43696300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 39701802 - 39701902
Alignment:
Q  337 attccttacccacaaatcaaaattctaattaaaaatcagaaacaaactaatgggtc-aaatcatagattttgaaactttctc-aaaacccctcctttgta 434  Q
    |||| |||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||||||||    
T  39701802 attcattactcacaaatcaaaatcctaattaaaaatcacaaacaaactaatgggtcaaaatcatagaatttgaaactttctcaaaaacccatcctttgta 39701901  T
Q  435 c 435  Q
    |    
T  39701902 c 39701902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 337 - 421
Target Start/End: Complemental strand, 34370546 - 34370461
Alignment:
Q  337 attccttacccacaaatcaaaattctaattaaaaatcagaaacaaactaatgggtc-aaatcatagattttgaaactttctcaaaa 421  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||| ||| ||||||||||||||    
T  34370546 attccttactcacaaatcaaaatcctaattaaaaatcacaaacaaactaattggtcaaaatcatagaatttaaaactttctcaaaa 34370461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 477
Target Start/End: Complemental strand, 34370303 - 34370271
Alignment:
Q  445 agttgttggagaaagagatagatccaattccga 477  Q
    |||||||||||||||||||||||||||||||||    
T  34370303 agttgttggagaaagagatagatccaattccga 34370271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 7084411 - 7084374
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  7084411 acaaaaataaacgatattcattcattcaaattgataga 7084374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 8517111 - 8517148
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  8517111 acaaaaataaacgatattcattcattcaaattgataga 8517148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 13966012 - 13965975
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  13966012 acaaaaataaacgatattcattcattcaaattgataga 13965975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 14346879 - 14346842
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  14346879 acaaaaataaacgatattcattcattcaaattgataga 14346842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 24826108 - 24826071
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  24826108 acaaaaataaacgatattcattcattcaaattgataga 24826071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 38435046 - 38435009
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  38435046 acaaaaataaacgatattcattcattcaaattgataga 38435009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 42198022 - 42197985
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  42198022 acaaaaataaacgatattcattcattcaaattgataga 42197985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 43244033 - 43244070
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  43244033 acaaaaataaacgatattcattcattcaaattgataga 43244070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 45350722 - 45350759
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  45350722 acaaaaataaacgatattcattcattcaaattgataga 45350759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 45360201 - 45360238
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  45360201 acaaaaataaacgatattcattcattcaaattgataga 45360238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 55600198 - 55600235
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  55600198 acaaaaataaacgatattcattcattcaaattgataga 55600235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 332 - 435
Target Start/End: Complemental strand, 14114313 - 14114208
Alignment:
Q  332 aaactattccttacccacaaatcaaaattctaattaaaaatcagaaacaaactaatgggtc-aaatcatagattttgaaactttctc-aaaacccctcct 429  Q
    |||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||| ||||||| |||||| ||||||| ||||    
T  14114313 aaaccattccttactcacaaatcaaaatcctaattaaaaatcacaaacaaactaatgggtcaaaattatagaatttgaaagtttctcaaaaacccatcct 14114214  T
Q  430 ttgtac 435  Q
    ||||||    
T  14114213 ttgtac 14114208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 31936285 - 31936322
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    |||||||||||||||||||||| |||||||||||||||    
T  31936285 acaaaaataaacgatattcgttcattcaaattgataga 31936322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 477
Target Start/End: Complemental strand, 14114062 - 14114030
Alignment:
Q  445 agttgttggagaaagagatagatccaattccga 477  Q
    |||||||||||||||||||||||||||||||||    
T  14114062 agttgttggagaaagagatagatccaattccga 14114030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 4660897 - 4660860
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  4660897 acaaaaataaacgatattcattcattcaaattgataga 4660860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 5146395 - 5146358
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  5146395 acaaaaataaacgatattcattcattcaaattgataga 5146358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 12653970 - 12654007
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  12653970 acaaaaataaacgatattcattcattcaaattgataga 12654007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 15589777 - 15589814
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  15589777 acaaaaataaacgatattcattcattcaaattgataga 15589814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 19402504 - 19402541
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  19402504 acaaaaataaacgatattcattcattcaaattgataga 19402541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 23654718 - 23654681
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  23654718 acaaaaataaacgatattcattcattcaaattgataga 23654681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 30813526 - 30813489
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  30813526 acaaaaataaacgatattcattcattcaaattgataga 30813489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 3364 - 3327
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  3364 acaaaaataaacgatattcattcattcaaattgataga 3327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 35544 - 35507
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  35544 acaaaaataaacgatattcattcattcaaattgataga 35507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 2234130 - 2234167
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  2234130 acaaaaataaacgatattcattcattcaaattgataga 2234167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 24790830 - 24790867
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  24790830 acaaaaataaacgatattcattcattcaaattgataga 24790867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 31202917 - 31202880
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  31202917 acaaaaataaacgatattcattcattcaaattgataga 31202880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 37613105 - 37613068
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  37613105 acaaaaataaacgatattcattcattcaaattgataga 37613068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 2623061 - 2623024
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  2623061 acaaaaataaacgatattcattcattcaaattgataga 2623024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 4621032 - 4621069
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  4621032 acaaaaataaacgatattcattcattcaaattgataga 4621069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 6667864 - 6667827
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  6667864 acaaaaataaacgatattcattcattcaaattgataga 6667827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 21991131 - 21991094
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  21991131 acaaaaataaacgatattcattcattcaaattgataga 21991094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 32741212 - 32741175
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  32741212 acaaaaataaacgatattcatttattcaaattgataga 32741175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 38277266 - 38277229
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  38277266 acaaaaataaacgatattcattcattcaaattgataga 38277229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 39707737 - 39707700
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  39707737 acaaaaataaacgatattcattcattcaaattgataga 39707700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 41288425 - 41288388
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  41288425 acaaaaataaacgatattctttcattcaaattgataga 41288388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 44482530 - 44482567
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  44482530 acaaaaataaacgatattcattcattcaaattgataga 44482567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 48643478 - 48643515
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  48643478 acaaaaataaacgatattcattcattcaaattgataga 48643515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 9785786 - 9785750
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgatag 152  Q
    ||||||||||||||||||| || ||||||||||||||    
T  9785786 acaaaaataaacgatattcattcattcaaattgatag 9785750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 37375709 - 37375745
Alignment:
Q  117 caaaaataaacgatattcgttaattcaaattgataga 153  Q
    |||||||||||||||||| || |||||||||||||||    
T  37375709 caaaaataaacgatattcattcattcaaattgataga 37375745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 9196683 - 9196720
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  9196683 acaaaaataaacgatattcattcattcaaattgataga 9196720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 17331797 - 17331760
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  17331797 acaaaaataaacgatattcattcattcaaattgataga 17331760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 23881768 - 23881805
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  23881768 acaaaaataaacgatattcattcattcaaattgataga 23881805  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 34431533 - 34431496
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  34431533 acaaaaataaacgatattcattcattcaaattgataga 34431496  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 39531060 - 39531097
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  39531060 acaaaaataaacgatattcattcattcaaattgataga 39531097  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 42505065 - 42505102
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  42505065 acaaaaataaacgatattcattcattcaaattgataga 42505102  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 42396164 - 42396200
Alignment:
Q  118 aaaaataaacgatattcgttaattcaaattgatagaa 154  Q
    ||||||||||||||||| || ||||||||||||||||    
T  42396164 aaaaataaacgatattcattcattcaaattgatagaa 42396200  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 473
Target Start/End: Original strand, 42876537 - 42876565
Alignment:
Q  445 agttgttggagaaagagatagatccaatt 473  Q
    |||||||||||||||||||||||||||||    
T  42876537 agttgttggagaaagagatagatccaatt 42876565  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 4882029 - 4882066
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  4882029 acaaaaataaacgatattcattcattcaaattgataga 4882066  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 12872075 - 12872038
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  12872075 acaaaaataaacgatattcattcattcaaattgataga 12872038  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 13152896 - 13152859
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  13152896 acaaaaataaacgatattcattcattcaaattgataga 13152859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 28677791 - 28677828
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  28677791 acaaaaataaacgatattcatttattcaaattgataga 28677828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 29205737 - 29205700
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  29205737 acaaaaataaacgatattcattcattcaaattgataga 29205700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 32784548 - 32784511
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  32784548 acaaaaataaactatattcattaattcaaattgataga 32784511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 44517617 - 44517580
Alignment:
Q  116 acaaaaataaacgatattcgttaattcaaattgataga 153  Q
    ||||||||||||||||||| || |||||||||||||||    
T  44517617 acaaaaataaacgatattcattcattcaaattgataga 44517580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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