View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0204-INSERTION4 (Length: 751)

Name: NF0204-INSERTION4
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0204-INSERTION4
NF0204-INSERTION4
[»] chr4 (3 HSPs)
chr4 (8-751)||(54219732-54220473)
chr4 (10-101)||(31239859-31239950)
chr4 (10-101)||(31256356-31256447)
[»] chr5 (4 HSPs)
chr5 (289-563)||(17594279-17594553)
chr5 (16-101)||(17594016-17594101)
chr5 (29-77)||(9891799-9891847)
chr5 (687-729)||(17594730-17594772)
[»] chr7 (6 HSPs)
chr7 (289-563)||(14728934-14729208)
chr7 (16-101)||(14729386-14729471)
chr7 (687-721)||(7639113-7639147)
chr7 (29-77)||(1095059-1095107)
chr7 (687-727)||(7632409-7632449)
chr7 (202-244)||(14740784-14740826)
[»] chr3 (2 HSPs)
chr3 (8-101)||(16130598-16130691)
chr3 (180-237)||(16130769-16130826)


Alignment Details
Target: chr4 (Bit Score: 713; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 8 - 751
Target Start/End: Complemental strand, 54220473 - 54219732
Alignment:
Q  8 ctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtggaaacacttgtggactcgatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54220473 ctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagtgaaaaagtggaaacacttgtggactcgatc 54220374  T
Q  108 acttactcttctttgattttcaaattcctcatttttgtgatgggttacaccaccaaaatttgaagttagcagattgcgtcttcgatctagttggaagact 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54220373 acttactcttctttgattttcaaattcctcatttttgtgatgggttacaccaccaaaatttgaagttagcagattgcgtcttcgatctagttggaagact 54220274  T
Q  208 acttcacaaatctaatcacatagaaaggctctgcattaaggtgcaaggaattgatatatatgatgcatggaaagttaatattttgttatcttatgcactg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54220273 acttcacaaatctaatcacatagaaaggctctgcattaaggtgcaaggaattgatatatatgatgcatggaaagttaatattttgttatcttatgcactg 54220174  T
Q  308 aagcacaaagtccttgatcttaaactttccctaaattttatagattctaggtttaagttaccccataatttctcatcttctcactcattgaataagttgt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54220173 aagcacaaagtccttgatcttaaactttccctaaattttatagattctaggtttaagttaccccataatttctcatcttctcactcattgaataagttgt 54220074  T
Q  408 atttagaatctggcgtccatatgtttatacctgatggtatttgcttcacaaatctgaagacattatatctttcacgtctttccttcaataatgagatgtc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54220073 atttagaatctggcgtccatatgtttatacctgatggtatttgcttcccaaatctgaagacattatatctttcacgtctttccttcaataatgagatgtc 54219974  T
Q  508 ggcccaacgacttctctctgggtgccctatccttgaagagttgatcttatataaatgcatatgggttaacataaatcagatatgtgtttcaatttccaag 607  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54219973 ggcccaacgacttctctctgggtgccctatccttgaagagttgaccttatataaatgtatatgggttaacataaatcagatatgtgtttcaatttccaag 54219874  T
Q  608 ttgtatagtcataattgatgctgtgaatcttttgtctttatttttaagttgcacgagtaatccagctataaaataaattcttgttaaaccaacctccata 707  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54219873 ttgtatagtcataattgatgctgtgaatc--ttgtctttatttttaagttgcacgagtaatccagctataaaatatattcttgttaaaccaacctccata 54219776  T
Q  708 gttgatgcatatattgatcttaagttttcctatcctgaaaatcc 751  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54219775 gttgatgcatatattgatcttaagttttcctatcctgaaaatcc 54219732  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 31239950 - 31239859
Alignment:
Q  10 gaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtggaaacacttgtggac 101  Q
    |||| |||||||||| |||||||||| ||  ||||||| ||||||||||||| ||| |||||||| || || ||||||||||| ||||||||    
T  31239950 gagggcgttcttcttcatattctttcattgctccctacgaaagatgctgtaagaacttccatattggctaagaagtggaaacaattgtggac 31239859  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 31256447 - 31256356
Alignment:
Q  10 gaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtggaaacacttgtggac 101  Q
    |||| |||||||||| |||||||||| ||  ||||||| ||||||||||||| ||| |||||||| || || ||||||||||| ||||||||    
T  31256447 gagggcgttcttcttcatattctttcattgctccctacgaaagatgctgtaagaacttccatattggctaagaagtggaaacaattgtggac 31256356  T

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Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 289 - 563
Target Start/End: Original strand, 17594279 - 17594553
Alignment:
Q  289 tttgttatcttatgcactgaagcacaaagtccttgatcttaaactttccctaaattttatagattctaggtttaagttaccccataatttctcatcttct 388  Q
    |||||||||||  ||| ||| ||||||| ||||||||||||||||||||||| |   || |  | ||||||||  ||||||| ||||||||||| | ||     
T  17594279 tttgttatcttcagcattgatgcacaaactccttgatcttaaactttccctagaccatacatttgctaggtttgtgttacccaataatttctcagcatcc 17594378  T
Q  389 cactcattgaataagttgtatttagaatctggcgtccatatgtttatacctgatggtatttgcttcacaaatctgaagacattatatctttcacgtcttt 488  Q
    || |||||||||||||||| |||||||| |||  ||  | | | |||||||||||||||  | ||| | ||  ||||||| ||||||||||||| |||||    
T  17594379 caatcattgaataagttgtgtttagaatttggtttcattctatatatacctgatggtatacgtttccctaacttgaagacgttatatctttcacatcttt 17594478  T
Q  489 ccttcaataatgagatgtcggcccaacgacttctctctgggtgccctatccttgaagagttgatcttatataaat 563  Q
    |||||   ||||||| |||||| ||||| ||| | |||||||||||| ||||  ||||||||| ||| |||||||    
T  17594479 ccttcgcaaatgagaagtcggctcaacggcttttgtctgggtgccctgtcctacaagagttgaccttgtataaat 17594553  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 17594016 - 17594101
Alignment:
Q  16 gttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtggaaacacttgtggac 101  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| | |||||||||| ||||||||||    
T  17594016 gttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggac 17594101  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 9891847 - 9891799
Alignment:
Q  29 ttctttctttagtccctaccaaagatgctgtaaaaacctccatattagc 77  Q
    ||||||| ||| ||||||||||||||||||||| ||| |||||||||||    
T  9891847 ttctttcgttactccctaccaaagatgctgtaagaacttccatattagc 9891799  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 729
Target Start/End: Original strand, 17594730 - 17594772
Alignment:
Q  687 cttgttaaaccaacctccatagttgatgcatatattgatctta 729  Q
    |||||||| || ||||||||||||||||||| |||||||||||    
T  17594730 cttgttaaccctacctccatagttgatgcatgtattgatctta 17594772  T

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Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 289 - 563
Target Start/End: Complemental strand, 14729208 - 14728934
Alignment:
Q  289 tttgttatcttatgcactgaagcacaaagtccttgatcttaaactttccctaaattttatagattctaggtttaagttaccccataatttctcatcttct 388  Q
    |||||||||||  ||| ||| ||||||| ||||||||||||||||||||||| |    | |  | ||||||||  ||||||| ||||||||||| | ||     
T  14729208 tttgttatcttcagcattgatgcacaaactccttgatcttaaactttccctagaccaaacatttgctaggtttgtgttacccaataatttctcagcatcc 14729109  T
Q  389 cactcattgaataagttgtatttagaatctggcgtccatatgtttatacctgatggtatttgcttcacaaatctgaagacattatatctttcacgtcttt 488  Q
    || ||||||||||||||||  ||||||| |||  ||  | | | |||||||||||||||  | ||| | ||  ||||||| ||||||||||||| |||||    
T  14729108 caatcattgaataagttgtgcttagaatttggtttcactctatatatacctgatggtatacgtttccctaacttgaagacgttatatctttcacatcttt 14729009  T
Q  489 ccttcaataatgagatgtcggcccaacgacttctctctgggtgccctatccttgaagagttgatcttatataaat 563  Q
    ||||| | ||||||| |||||| ||||| ||| | |||||||||||| ||||  ||||||||| ||| |||||||    
T  14729008 ccttcgaaaatgagaagtcggctcaacggcttttgtctgggtgccctgtcctacaagagttgaccttgtataaat 14728934  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 14729471 - 14729386
Alignment:
Q  16 gttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtggaaacacttgtggac 101  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| | |||||||||| ||||||||||    
T  14729471 gttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggac 14729386  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 721
Target Start/End: Original strand, 7639113 - 7639147
Alignment:
Q  687 cttgttaaaccaacctccatagttgatgcatatat 721  Q
    |||||||||||||||||||||||||||||||||||    
T  7639113 cttgttaaaccaacctccatagttgatgcatatat 7639147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 1095059 - 1095107
Alignment:
Q  29 ttctttctttagtccctaccaaagatgctgtaaaaacctccatattagc 77  Q
    ||||||| ||| ||||||||||||||||||||| ||| |||||||||||    
T  1095059 ttctttcgttactccctaccaaagatgctgtaagaacttccatattagc 1095107  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 687 - 727
Target Start/End: Original strand, 7632409 - 7632449
Alignment:
Q  687 cttgttaaaccaacctccatagttgatgcatatattgatct 727  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  7632409 cttgttaaaccaacctccatagttgatgcagatatagatct 7632449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 14740826 - 14740784
Alignment:
Q  202 aagactacttcacaaatctaatcacatagaaaggctctgcatt 244  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||    
T  14740826 aagactactacacaaatccaatcacatagaaaggctttgcatt 14740784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 16130598 - 16130691
Alignment:
Q  8 ctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtggaaacacttgtggac 101  Q
    |||||| |||||||||| |||||||||||||| |||| |||||||||| ||||| ||| |||||| |||| || |||||||| |||||||||||    
T  16130598 ctgaggccgttcttcttcatattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtggaagcacttgtggac 16130691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 16130769 - 16130826
Alignment:
Q  180 attgcgtcttcgatctagttggaagactacttcacaaatctaatcacatagaaaggct 237  Q
    ||||| |||| |||||||||||||||||  | |||||||||| || ||||||||||||    
T  16130769 attgcctcttagatctagttggaagacttatgcacaaatctactcgcatagaaaggct 16130826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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