View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0204-INSERTION7 (Length: 496)
Name: NF0204-INSERTION7
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0204-INSERTION7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Original strand, 46080485 - 46080969
Alignment:
| Q |
8 |
atgccaaccaatattgtttcaactttcaacattgctactactttaaacagcgaataatcttcttccacgatatcttgtcggcaatgtgtaatatcccaag |
107 |
Q |
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| T |
46080485 |
atgccaaccaatattgtttcaactttcaacattgctactactttaaacagcgaataatcttcttccacgatatcttgtcggcaatgtgtaatatcccaag |
46080584 |
T |
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| Q |
108 |
tcaataatataagtggagaagaataagtagaattaatattgggtatgcatgagagtgatctttaacataatcatgcttattcttgtgctgattataattt |
207 |
Q |
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| T |
46080585 |
tcaata---taagtggagaagaataagtagaattaatattgggtatgcatgagagtgatctttaacataatcatgcttattcttgtggtggttataattt |
46080681 |
T |
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| Q |
208 |
ataattacatcatgcggcttttgctaattaagtgaacgattttcttgttaatatgacgagttacatttgtggtttgatggttttcttcttcttcttctaa |
307 |
Q |
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| T |
46080682 |
ataattacatcacgcggcttttgctaattaagtgaacgattttcttgttaacatgacgagttacatttgtggtttcatggttttttttttcttcttctaa |
46080781 |
T |
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| Q |
308 |
gttacccgtcaatgaataggggtgatttatctatctctttcnnnnnnnnnntctcattttcttgatttttattcttacaatcgattaccctttttatctt |
407 |
Q |
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| T |
46080782 |
gttacccgttaatgaatagggatgatttatctatctctttc-aaagaaaaatctcattttcttcatttttattctcagaatcgattaccatttttatctt |
46080880 |
T |
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| Q |
408 |
aaaaacatcaaattcttcatctctttcatttcattccacagtcgaatcatacttgtcattaggggtaatgtaggccttatcgataggat |
496 |
Q |
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| T |
46080881 |
aagaacatcaaattcttcatctctttcatttcattccacagtcaaatcatacttgtcattaggggtaatgtataccttaccgataggat |
46080969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 35956981 - 35957026
Alignment:
| Q |
374 |
ttttattcttacaatcgattaccctttttatcttaaaaacatcaaa |
419 |
Q |
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| T |
35956981 |
ttttattcttacaattaattaccatttttatctcaaaaacatcaaa |
35957026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 43208734 - 43208792
Alignment:
| Q |
364 |
ttttcttgatttttattcttacaatcgattaccctttttatcttaaaaacatcaaattc |
422 |
Q |
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| T |
43208734 |
ttttcttcatctttattcttacaatcaattaccatttttattttaagaatatcaaattc |
43208792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 17736970 - 17736929
Alignment:
| Q |
380 |
tcttacaatcgattaccctttttatcttaaaaacatcaaatt |
421 |
Q |
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| T |
17736970 |
tcttacaatcgattaccatttttatcttaagaatatcaaatt |
17736929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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