View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0204-INSERTION8 (Length: 609)
Name: NF0204-INSERTION8
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0204-INSERTION8 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0428 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 609
Target Start/End: Original strand, 894794 - 895395
Alignment:
| Q |
8 |
agaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtggaggggtcccactggataaaaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894794 |
agaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtggaggggtcccactggataaaaa |
894893 |
T |
|
| Q |
108 |
caaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacaca |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894894 |
caaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacaca |
894993 |
T |
|
| Q |
208 |
catcaagaaatgatttgtactctaaacttgatctttcacatagaagtggatcaggaatatctttgatatggtaagggactatactacctggaacattcac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894994 |
catcaagaaatgatttgtactctaaacttgatctttcacatagaagtggatcaggaatatctttgatatggtaagggactatactacctggaacattcac |
895093 |
T |
|
| Q |
308 |
agtttcataagctgattctaagaactctatttccgaggaaatagagtcgtcgagattcggaagagtgagataaaatgatgttggaacagctcccgaggca |
407 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
895094 |
agtttcataagctgactctaagaactctatttccgaggaaatagagtcgtcgagattcagaagagtgagataaaatgatgttggaacagctcctgaggca |
895193 |
T |
|
| Q |
408 |
tagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggtaagttttggaaatga |
507 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
895194 |
tagaaaaggtaagaagacaagttaaattgtttggcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggttagttttggaaatga |
895293 |
T |
|
| Q |
508 |
gtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaatattttttacttgagg |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
895294 |
gtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatcatggctttgttgaatattttttacttgagg |
895393 |
T |
|
| Q |
608 |
aa |
609 |
Q |
| |
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|| |
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| T |
895394 |
aa |
895395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 574
Target Start/End: Complemental strand, 905849 - 905283
Alignment:
| Q |
8 |
agaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtggaggggtcccactggataaaaa |
107 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | |
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| T |
905849 |
agaatttggaggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaaca |
905750 |
T |
|
| Q |
108 |
caaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacaca |
207 |
Q |
| |
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||||||||||||||||||||||||| |||||| || || || ||||||||| |||||||| | || |||| |||||||||||||| || ||||||||| | |
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| T |
905749 |
caaggtttctctttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaa |
905650 |
T |
|
| Q |
208 |
catcaagaaatgatttgtactctaaacttgatctttcacatagaagtggatcaggaatatctttgatatggtaagggactatactacctggaacattcac |
307 |
Q |
| |
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| ||||||||| |||||| | || | |||||||||||||||||| | || ||||||||||||||||| | |||| | || |||||||| |||||| |
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| T |
905649 |
cttcaagaaatattttgtaatttacatttgatctttcacatagaattatttctggaatatctttgatatgaaatgggatgacacaacctggaatattcac |
905550 |
T |
|
| Q |
308 |
agtttcataagctgattctaagaactctatttccgaggaaatagagtcgtcgagattcggaagagtgagataaaatgatgttggaacagctcccgaggca |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||| | ||||| || || ||| ||||||||| |
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| T |
905549 |
agtttcataagctgattctaagaattctgcttcagaggaaacagagtcgtcgagattcggaagagtgagaaagaatgacaatgaaagagcacccgaggca |
905450 |
T |
|
| Q |
408 |
tagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaaggtaagttttggaaatga |
507 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| |||||| ||||| |||| || ||||||||||||||||||| |||||||||||||| |
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|
| T |
905449 |
tagaaaaggtaagaagataaattgaattgtttagcaacttcatgtgcatcggttgagaatagaccaaagattaaagaaacaaggttagttttggaaatga |
905350 |
T |
|
| Q |
508 |
gtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcagg |
574 |
Q |
| |
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||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
905349 |
gtgattttacttcttcttgtagaaatggaatagaatgtttcacaatgagtttcatttgtgttgcagg |
905283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 8294746 - 8294982
Alignment:
| Q |
8 |
agaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtggaggggtcccactggataaaaa |
107 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||| ||| |||||||| || | ||||| || ||||||| | |
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| T |
8294746 |
agaacttggttgttgattttccaaccaccttaaacacattgac---atgtttgcttcattatttgactcattcctaatcataggtccaaccggataaaca |
8294842 |
T |
|
| Q |
108 |
caaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacaca |
207 |
Q |
| |
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| |||||||||| | |||||||||| ||||||||| || |||||||||||| ||||||| || || ||||||||||||| ||||| ||||||||||||| |
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| T |
8294843 |
ctaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaacaatgataatttttgacaca |
8294942 |
T |
|
| Q |
208 |
catcaagaaatgatttgtactctaaacttgatctttcaca |
247 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||||||| |
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|
| T |
8294943 |
catcaagaattgatttgtaggcatcacttgatctttcaca |
8294982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 392 - 578
Target Start/End: Original strand, 8295121 - 8295307
Alignment:
| Q |
392 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
491 |
Q |
| |
|
||||||||| |||| | |||||||||| || | | |||||| ||||| ||||| |||| |||||| |||||||| || ||||| | ||||| ||| ||| |
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| T |
8295121 |
aacagctcctgaggaaaagaaaaggtatgataaaaggttgaaatgtttcgcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactagg |
8295220 |
T |
|
| Q |
492 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtgctgcaggatca |
578 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| | ||||||||||||||| |||||||| ||||||||||| |||| |||||||||| |
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|
| T |
8295221 |
cgagtttttgaaaggagtgattttacttcttcataaagaaatggaatagagtgtttcactatgagtttcatctgtgttgcaggatca |
8295307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 392 - 567
Target Start/End: Complemental strand, 33256634 - 33256459
Alignment:
| Q |
392 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
491 |
Q |
| |
|
||||||||| || | | ||||||||||||| | | |||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| ||||||| |
|
|
| T |
33256634 |
aacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaagg |
33256535 |
T |
|
| Q |
492 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtg |
567 |
Q |
| |
|
| |||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
33256534 |
ttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatttgtg |
33256459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 33257009 - 33256794
Alignment:
| Q |
8 |
agaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtggaggggtcccactggataaaaa |
107 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||| ||| ||||||||||| || ||||| || ||| ||| | |
|
|
| T |
33257009 |
agaacttggtggctgattttccaaccaccttaaacacactgac---atgtttgcttcattatttgactcatttctaatgataggtccaaccggaaaaaca |
33256913 |
T |
|
| Q |
108 |
caaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacaca |
207 |
Q |
| |
|
| |||||||||| | |||||||| | ||||| | | || ||||||||| | ||||||| || || ||||||||||||| ||||| |||||||||||| |
|
|
| T |
33256912 |
ctaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactgaaagtattgattataacaccatcaaacaatgacgatttttgacaca |
33256813 |
T |
|
| Q |
208 |
catcaagaaatgatttgta |
226 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
33256812 |
catcaaggattgatttgta |
33256794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 392 - 567
Target Start/End: Complemental strand, 752 - 577
Alignment:
| Q |
392 |
aacagctcccgaggcatagaaaaggtaagaagacaagttgaattgtttagcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
491 |
Q |
| |
|
||||||||| || | | ||||||||||||| | | |||||| |||||||| || || | |||||| |||||||| || ||| | | ||||| ||||||| |
|
|
| T |
752 |
aacagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaagg |
653 |
T |
|
| Q |
492 |
taagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcatttgtg |
567 |
Q |
| |
|
| |||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
652 |
ttagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatttgtg |
577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 1127 - 912
Alignment:
| Q |
8 |
agaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtggaggggtcccactggataaaaa |
107 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||| ||| ||||||||||| || ||||| || ||| ||| | |
|
|
| T |
1127 |
agaacttggtggctgattttccaaccaccttaaacacactgac---atgtttgcttcattatttgactcatttctaatgataggtccaaccggaaaaaca |
1031 |
T |
|
| Q |
108 |
caaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacaca |
207 |
Q |
| |
|
| |||||||||| | |||||||| | ||||| | | || ||||||||| | ||||||| || || ||||||||||||| ||||| |||||||||||| |
|
|
| T |
1030 |
ctaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactgaaagtattgattataacaccatcaaacaatgacgatttttgacaca |
931 |
T |
|
| Q |
208 |
catcaagaaatgatttgta |
226 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
930 |
catcaaggattgatttgta |
912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 46720553 - 46720614
Alignment:
| Q |
148 |
gttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacacaca |
209 |
Q |
| |
|
||||||||||| ||||||| || || ||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
46720553 |
gttccaaatcagtgaaagtattcataataacaccatcaaacaatgataattttggacacaca |
46720614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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