View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0204-INSERTION9 (Length: 700)

Name: NF0204-INSERTION9
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0204-INSERTION9
NF0204-INSERTION9
[»] chr3 (1 HSPs)
chr3 (17-700)||(45655641-45656325)


Alignment Details
Target: chr3 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 17 - 700
Target Start/End: Original strand, 45655641 - 45656325
Alignment:
Q  17 ttaattcattgacaaagactattcaattttgaatcacagagatgcttgtgcttacaactatcaatttcttttatctgttcagcctcaagttcacaaagag 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45655641 ttaattcattaacaaagactattcaattttgaatcacagagatgcttgtgcttacaactatcaatttcttttatctgttcagcctcaagttcacaaagag 45655740  T
Q  117 acaaactacctgtaaaaacacatcatttaaaccaataaaaaactttgcattattggttagaatgagaaaacattcaaaatgtttgaagcaagggcataca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45655741 acaaactacctgtaaaaacacatcatttaaaccaataaaaaactttgaattattggttagaatgagaaaacaatcaaaatgtttgaagcaagggcataca 45655840  T
Q  217 acatcaataatatcaatcagttttgttggcttctgcctcattgacgctcaactcagaagatgtatcttcagaccctgcactctcctccgccagttgaaca 316  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45655841 acatcaataatatcaatcagttttgtcggcttctgcctcattgacgctcaactcagaagatgtatcttcagaccctgcactctcctccgccagttgaaca 45655940  T
Q  317 aaccgcttactatgtgccacccttagtggccttcccataaaattctgcacaaatatcaaattttccactgtcacactagcaactaaataaannnnnnnca 416  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  45655941 aaccgcttactaggtgccacccttagtggccttcccataaaattctgcacaaatatcaaattttccactgtcacactagcaactaaataaatttttttca 45656040  T
Q  417 ataattccaagaaattgcagttaaaatttgtgagaacgacattacacatactcatgaatccaaattcaaattaataaattggtgcaagaagcaatgagtt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45656041 ataattccaagaaattgcagttaaaatttgtgagaacgacattacacatactcatgaatccaaattcaaattaataaattggtgcaagaagcaatgagtt 45656140  T
Q  517 acctttccttgaaactcggcaagagcttcatcagcttctttcttagacttgtaggagacaaatccataaccagatggtcgtctaggattctcatgaaata 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45656141 acctttccttgaaactcggcaagagcttcatcagcttctttcttagacttgtaggagacaaatccataaccagatggtcgtcgaggattctcatgaaata 45656240  T
Q  617 taacctctgcagaaacaactttaccagttcctgaatcaaaaaactccttgacgtctttagaccttgcttcataa-gaaagtttgc 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45656241 taacctctgcagaaacaactttaccagttcctgaatcaaaaaactccttgacgtctttagaccttgcttcataaggaaagtttgc 45656325  T

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