View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0204_low_1 (Length: 414)
Name: NF0204_low_1
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0204_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 30 - 410
Target Start/End: Complemental strand, 49538834 - 49538455
Alignment:
| Q |
30 |
tttggttggaggcagcggcttggatcttttagaatttgttgtctcatatcgttaacaaatagagttgcaattcgtaatggctctattagtgtgctctagt |
129 |
Q |
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| T |
49538834 |
tttggttggaggcagcggcttggatcttttagaatttgttgtctcatatcgttaacaaatagagttgcaattcgtaatggctctattagtgtgctctagt |
49538735 |
T |
|
| Q |
130 |
caattaactaagcataatcaaatcctccactagtaacctagtaaagtcacaatgtaagtcatatacatttttaatctagaccactacaaggaaaaagggt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49538734 |
caattaactaagcataatcaaatcctccactagtaacctagtatattcacaatgtaagtcatatacatttttaatctagaccactacaaggaaaaagggt |
49538635 |
T |
|
| Q |
230 |
agtaaagtaacataactttgcatgcatgtaatgaagcttcacattcaaaataacaagattaatagaaaacttatcttcattgacattttcaagcatatca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49538634 |
agtaaagtaacataactttgcatgcatgtaatgaagcttcacattcaaaataacaagattaatagaaaacttatcttcattgacattttcaagcatatca |
49538535 |
T |
|
| Q |
330 |
caatactttacattttcccttttgccacccgtctttcttattcacactcattctcatctactccatcctttcttctcactc |
410 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49538534 |
caatactttacatttt-ccttttgccactcgtctttcttattcacactcattctcatctactccatcctttcttttcactc |
49538455 |
T |
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