View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0204_low_2 (Length: 391)
Name: NF0204_low_2
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0204_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 25703728 - 25703368
Alignment:
| Q |
7 |
aaagattccaaagatgtggatgacaaagaaaaggatttcaaataggtgaagttgacgaagttatatagcaccatcatggaagcgtgggaaaatatggttg |
106 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
25703728 |
aaagattccaaagaggtggatgacaaagaaaaggatttcaaataggtgaagttgacgaagttatatagcaccagcatgg--------gaaaatatggttg |
25703637 |
T |
|
| Q |
107 |
aatctctttccaaggaatcattggttgaagccattgtacaattccaaaatgtatgtagaaacttcccaaagctgctcaactatgtttaacattccatatt |
206 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
25703636 |
aatctctttccaaggaatcattggttgaaaccattgtacaattccaaaatgtatgtagaaacttcccaaagttgctcaactatgtttagcattccatatt |
25703537 |
T |
|
| Q |
207 |
gaatcccttgtaggaagaaattgtaagggcatggacataccatgtcttgcatctttgtatcccaaccactaatatagttgaatctgtttatggaaggttg |
306 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25703536 |
gaatcccttgcaggaagaaattgtaagggcatggacataccatgtcttgcatctttgtatcccaaccattaatatagttgaatctgtttatggaaggttg |
25703437 |
T |
|
| Q |
307 |
aagaaatatttgacggatagtaagagagatttggttagagcttgggagacgaagaacaatatgttacaa |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25703436 |
aagaaatatttgacggatagtaagagagatttggttagagcttgggagacgaagaacaatatgttacaa |
25703368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 50115921 - 50115884
Alignment:
| Q |
224 |
aaattgtaagggcatggacataccatgtcttgcatctt |
261 |
Q |
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||||||| |||||||||||||||||||| ||||||||| |
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| T |
50115921 |
aaattgtgagggcatggacataccatgtgttgcatctt |
50115884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 372
Target Start/End: Original strand, 9266018 - 9266384
Alignment:
| Q |
7 |
aaagattccaaagatgtggatgacaaagaaaaggatttcaaataggtgaagttgacgaagttatatagcaccatcatggaagcgtgggaaaatatggttg |
106 |
Q |
| |
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||||||||| |||| |||||||| |||| |||||| | ||| ||||||||| | ||||||| || | ||||||| ||| ||||| ||||||| ||| |
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| T |
9266018 |
aaagattcctaagacgtggatgatgaagagaaggatatgaaagaggtgaagtccatgaagttaattaaaaacatcatgaaagtgtggggaaatatgattg |
9266117 |
T |
|
| Q |
107 |
aatctctttccaaggaatcattggttgaagccattgtacaattccaaaatgtatgtagaaacttcccaaagctgctcaactatgtttaacattccatatt |
206 |
Q |
| |
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|||| ||| |||||| |||| |||||| ||||||| ||||||| | | || ||||| |||| | ||||| | |||||||||||| || || |||||| |
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| T |
9266118 |
aatcctcttcgaaggaaccatttgttgaatccattgtgcaattccgagaggtgtgtaggaactactcaaagttcctcaactatgttgaaaataacatatt |
9266217 |
T |
|
| Q |
207 |
gaatcccttgtaggaagaaattgtaaggg-catggacataccatgtcttgcatctttgtatcccaaccactaatatagttgaatctgtttatggaaggtt |
305 |
Q |
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||| |||| || || | ||||||| || |||||||| ||||||||| | |||| ||| ||||||||| | ||||||||||| | ||| || ||| |
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| T |
9266218 |
aaatacctttaagaaaaagattgtaaaggacatggacaacccatgtcttacctcttggtaaaataaccactaacacagttgaatctgctcatgtaatgtt |
9266317 |
T |
|
| Q |
306 |
gaagaaatatttgacggatagtaagagagatttggttagagcttgggagacgaagaacaatatgtta |
372 |
Q |
| |
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||| |||||||||| |||||||||| |||||||||| | || ||||||| | ||||||||||||| |
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| T |
9266318 |
gaaaaaatatttgaaggatagtaagggagatttggtcaaagtttgggaggtaatgaacaatatgtta |
9266384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 16059872 - 16059802
Alignment:
| Q |
270 |
aaccactaatatagttgaatctgtttatggaaggttgaagaaatatttgacggatagtaagagagatttgg |
340 |
Q |
| |
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||||||||||| ||||||||||| |||||||| ||||||||| |||||| |||| ||||| ||||||||| |
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| T |
16059872 |
aaccactaataaagttgaatctggttatggaaaattgaagaaaaatttgaaggatggtaagggagatttgg |
16059802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 339
Target Start/End: Complemental strand, 7340363 - 7340205
Alignment:
| Q |
181 |
ctcaactatgtttaacattccatattgaatcccttgtaggaagaaattgtaagggcatggacataccatgtcttgcatctttgtatcccaaccactaata |
280 |
Q |
| |
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|||||||||||| || || |||| ||| |||| ||| ||||| ||||| | ||||||| ||| || ||||||||||||| ||| | ||||||||| | |
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| T |
7340363 |
ctcaactatgttgaaaataccatgttgcatcctttgaaggaacaaattatgtgggcatgaacaaactgtgtcttgcatcttggtaacataaccactaaca |
7340264 |
T |
|
| Q |
281 |
tagttgaatctgtttatggaaggttgaagaaatatttgacggatagtaagagagatttg |
339 |
Q |
| |
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|||||||| || | |||||||||| | ||||||||||| |||||||||| ||||||| |
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| T |
7340263 |
gagttgaatttgctcatggaaggttaaggaaatatttgatggatagtaaggaagatttg |
7340205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 351
Target Start/End: Complemental strand, 3546291 - 3546190
Alignment:
| Q |
250 |
gtcttgcatctttgtatcccaaccactaatatagttgaatctgtttatggaaggttgaagaaatatttgacggatagtaagagagatttggttagagctt |
349 |
Q |
| |
|
|||||||||||||| | | |||||||||| | |||| ||| || |||||||||||||||||||||||| |||||||||| |||||||| ||||| || |
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| T |
3546291 |
gtcttgcatctttgcaacacaaccactaacaaagttaaatatgccaatggaaggttgaagaaatatttgatggatagtaaggaagatttggctagaggtt |
3546192 |
T |
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| Q |
350 |
gg |
351 |
Q |
| |
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|| |
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|
| T |
3546191 |
gg |
3546190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 24148093 - 24148177
Alignment:
| Q |
20 |
atgtggatgacaaagaaaaggatttcaaataggtgaagttgacgaagttatatagcaccatcatggaagcgtgggaaaatatggt |
104 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||| |||||||||||| |||||||||||| | ||| |||||||||| |
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| T |
24148093 |
atgtggatgtcaaagagaaggatgtcaaataggtgaagtcgacgaagttataggacaccatcatggatgtgtgaaaaaatatggt |
24148177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 24148273 - 24148364
Alignment:
| Q |
200 |
ccatattgaatcccttgtaggaagaaattgtaagggcatggacataccatgtcttgcatctttgtatcccaaccactaatatagttgaatct |
291 |
Q |
| |
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|||| |||||||||||| ||||| ||||||| || ||||||||||||||||| |||||||| | | |||||||||| ||| |||||||| |
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|
| T |
24148273 |
ccattttgaatcccttgaaggaaaaaattgtgagagcatggacataccatgtgatgcatcttgacaacacaaccactaacataattgaatct |
24148364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 48249024 - 48248987
Alignment:
| Q |
224 |
aaattgtaagggcatggacataccatgtcttgcatctt |
261 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |
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| T |
48249024 |
aaattgtgagggcatggacataccatgtgttgcatctt |
48248987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 28347555 - 28347518
Alignment:
| Q |
224 |
aaattgtaagggcatggacataccatgtcttgcatctt |
261 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
28347555 |
aaattgtgagggcatggacagaccatgtcttgcatctt |
28347518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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