View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0204_low_3 (Length: 272)

Name: NF0204_low_3
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0204_low_3
NF0204_low_3
[»] chr2 (33 HSPs)
chr2 (9-120)||(43490119-43490234)
chr2 (9-89)||(2997474-2997554)
chr2 (9-118)||(38732354-38732467)
chr2 (9-118)||(45097722-45097835)
chr2 (18-121)||(40613898-40614005)
chr2 (9-86)||(13365389-13365466)
chr2 (18-118)||(9058480-9058584)
chr2 (18-89)||(2533157-2533227)
chr2 (9-72)||(3034970-3035033)
chr2 (18-113)||(28863460-28863559)
chr2 (18-120)||(13438341-13438447)
chr2 (18-123)||(19930816-19930925)
chr2 (17-118)||(33436095-33436200)
chr2 (18-82)||(42257233-42257297)
chr2 (18-118)||(10249378-10249482)
chr2 (18-89)||(38273138-38273209)
chr2 (18-120)||(28381651-28381757)
chr2 (24-118)||(32505650-32505748)
chr2 (32-79)||(3737986-3738033)
chr2 (18-89)||(7465731-7465802)
chr2 (18-89)||(17473053-17473124)
chr2 (39-118)||(15428757-15428840)
chr2 (52-89)||(17820034-17820071)
chr2 (52-118)||(26891534-26891604)
chr2 (57-119)||(40701477-40701543)
chr2 (18-89)||(5574484-5574555)
chr2 (16-120)||(27864702-27864810)
chr2 (18-118)||(30915463-30915567)
chr2 (18-89)||(36168869-36168940)
chr2 (57-119)||(4060684-4060750)
chr2 (17-89)||(41575170-41575243)
chr2 (17-89)||(20700848-20700920)
chr2 (17-89)||(33436244-33436316)
[»] chr6 (13 HSPs)
chr6 (9-119)||(15508011-15508125)
chr6 (9-118)||(15990029-15990142)
chr6 (9-118)||(30341347-30341460)
chr6 (9-119)||(4231547-4231661)
chr6 (18-120)||(32869676-32869782)
chr6 (18-89)||(31109396-31109467)
chr6 (18-118)||(31976248-31976352)
chr6 (18-113)||(22880654-22880753)
chr6 (18-120)||(17598552-17598658)
chr6 (18-89)||(11427651-11427722)
chr6 (57-89)||(23128162-23128194)
chr6 (18-118)||(31110757-31110859)
chr6 (53-89)||(31953061-31953097)
[»] chr1 (28 HSPs)
chr1 (9-119)||(50590987-50591101)
chr1 (9-119)||(41608480-41608594)
chr1 (9-118)||(5958987-5959100)
chr1 (9-120)||(47748441-47748555)
chr1 (9-81)||(44332358-44332430)
chr1 (18-118)||(32813247-32813351)
chr1 (18-118)||(3000319-3000423)
chr1 (18-89)||(49811523-49811594)
chr1 (24-118)||(2581915-2582013)
chr1 (18-119)||(9474872-9474977)
chr1 (33-118)||(45044571-45044660)
chr1 (18-89)||(26440767-26440838)
chr1 (18-118)||(38595154-38595258)
chr1 (18-120)||(47452316-47452422)
chr1 (18-119)||(48716278-48716383)
chr1 (18-118)||(37926434-37926538)
chr1 (18-118)||(38632317-38632421)
chr1 (18-89)||(41758838-41758909)
chr1 (18-118)||(50630458-50630562)
chr1 (32-89)||(11152388-11152445)
chr1 (18-120)||(27564731-27564837)
chr1 (24-89)||(51898685-51898750)
chr1 (18-89)||(43165-43236)
chr1 (18-89)||(8346384-8346455)
chr1 (18-89)||(44548372-44548443)
chr1 (52-89)||(37649231-37649268)
chr1 (61-89)||(13414794-13414822)
chr1 (17-81)||(44454020-44454084)
[»] chr8 (26 HSPs)
chr8 (9-118)||(16383377-16383490)
chr8 (9-118)||(24307780-24307893)
chr8 (9-118)||(34307216-34307329)
chr8 (9-118)||(16056388-16056501)
chr8 (9-118)||(30479461-30479574)
chr8 (16-118)||(32032725-32032830)
chr8 (18-119)||(40423939-40424044)
chr8 (18-116)||(10621083-10621185)
chr8 (18-119)||(15048178-15048282)
chr8 (41-118)||(24307629-24307710)
chr8 (18-118)||(12831047-12831151)
chr8 (18-120)||(15197331-15197437)
chr8 (18-118)||(1179936-1180040)
chr8 (18-88)||(43414577-43414647)
chr8 (18-120)||(504117-504223)
chr8 (17-90)||(8841427-8841500)
chr8 (18-120)||(34012292-34012398)
chr8 (17-118)||(10284626-10284731)
chr8 (18-111)||(14547929-14548026)
chr8 (9-78)||(32707990-32708061)
chr8 (18-120)||(23122593-23122699)
chr8 (24-89)||(37038512-37038577)
chr8 (57-89)||(5957863-5957895)
chr8 (18-78)||(9122229-9122289)
chr8 (52-80)||(38229470-38229498)
chr8 (57-118)||(44507122-44507187)
[»] chr5 (19 HSPs)
chr5 (9-118)||(3921252-3921365)
chr5 (9-118)||(2252155-2252268)
chr5 (14-118)||(39688889-39688997)
chr5 (18-120)||(28177773-28177879)
chr5 (18-89)||(42414298-42414369)
chr5 (18-113)||(18520880-18520979)
chr5 (18-119)||(26720515-26720620)
chr5 (18-119)||(26990264-26990369)
chr5 (26-118)||(15409614-15409710)
chr5 (18-120)||(33149634-33149740)
chr5 (18-120)||(40145405-40145511)
chr5 (33-89)||(6679731-6679787)
chr5 (18-89)||(2740307-2740378)
chr5 (18-89)||(36732938-36733009)
chr5 (57-119)||(35785198-35785264)
chr5 (57-118)||(35943927-35943992)
chr5 (19-82)||(13811692-13811755)
chr5 (24-120)||(14831812-14831912)
chr5 (63-113)||(36875644-36875698)
[»] chr7 (27 HSPs)
chr7 (9-118)||(22343361-22343474)
chr7 (9-118)||(41915741-41915854)
chr7 (9-118)||(38044197-38044310)
chr7 (9-120)||(8238210-8238326)
chr7 (9-119)||(32564413-32564527)
chr7 (9-118)||(7727906-7728019)
chr7 (9-118)||(40846100-40846213)
chr7 (18-89)||(35522909-35522980)
chr7 (32-118)||(46374812-46374902)
chr7 (18-119)||(38267039-38267144)
chr7 (18-118)||(7389389-7389493)
chr7 (19-120)||(21234399-21234504)
chr7 (18-118)||(8080379-8080483)
chr7 (49-88)||(27744336-27744375)
chr7 (18-118)||(36361909-36362013)
chr7 (18-118)||(36362026-36362130)
chr7 (18-121)||(19329839-19329946)
chr7 (32-118)||(26296644-26296734)
chr7 (18-120)||(35137531-35137637)
chr7 (17-118)||(36208173-36208278)
chr7 (18-89)||(3434595-3434666)
chr7 (18-89)||(3694400-3694471)
chr7 (18-118)||(38837217-38837321)
chr7 (18-113)||(3784000-3784099)
chr7 (33-78)||(43317547-43317592)
chr7 (52-118)||(46033831-46033901)
chr7 (57-89)||(19436222-19436254)
[»] chr4 (30 HSPs)
chr4 (9-118)||(19670703-19670816)
chr4 (9-118)||(55475191-55475304)
chr4 (15-118)||(47986208-47986315)
chr4 (9-89)||(17983730-17983810)
chr4 (9-118)||(29547946-29548059)
chr4 (9-118)||(32766958-32767071)
chr4 (9-118)||(50813879-50813992)
chr4 (9-120)||(18924482-18924597)
chr4 (9-110)||(29589727-29589831)
chr4 (9-118)||(55079700-55079814)
chr4 (9-118)||(8343150-8343263)
chr4 (9-118)||(44536733-44536845)
chr4 (18-119)||(6034043-6034148)
chr4 (18-119)||(31910191-31910296)
chr4 (18-119)||(11511458-11511563)
chr4 (17-89)||(50052423-50052495)
chr4 (18-118)||(480443-480547)
chr4 (18-89)||(48183045-48183116)
chr4 (57-120)||(40574777-40574844)
chr4 (17-89)||(29977918-29977990)
chr4 (18-119)||(54473529-54473634)
chr4 (18-118)||(41236347-41236451)
chr4 (18-84)||(41823920-41823986)
chr4 (52-89)||(50526201-50526238)
chr4 (17-89)||(18769142-18769214)
chr4 (18-118)||(42044363-42044467)
chr4 (57-120)||(3481652-3481719)
chr4 (17-82)||(56300160-56300225)
chr4 (57-89)||(23608268-23608300)
chr4 (17-118)||(29239886-29239991)
[»] chr3 (28 HSPs)
chr3 (9-87)||(36331316-36331394)
chr3 (9-119)||(45058540-45058653)
chr3 (18-89)||(51419356-51419427)
chr3 (18-120)||(26141528-26141634)
chr3 (18-120)||(53982009-53982115)
chr3 (17-118)||(8076393-8076498)
chr3 (18-89)||(31456722-31456793)
chr3 (15-115)||(42823114-42823218)
chr3 (19-89)||(27714888-27714958)
chr3 (17-115)||(26754698-26754800)
chr3 (18-119)||(20764911-20765016)
chr3 (18-119)||(33644199-33644304)
chr3 (18-118)||(11347918-11348022)
chr3 (18-118)||(11907371-11907475)
chr3 (17-113)||(30801728-30801828)
chr3 (18-118)||(41189760-41189864)
chr3 (18-114)||(52629304-52629404)
chr3 (18-113)||(48587087-48587186)
chr3 (57-118)||(11095388-11095453)
chr3 (57-118)||(33118886-33118951)
chr3 (57-118)||(36707459-36707524)
chr3 (57-118)||(49607414-49607479)
chr3 (33-76)||(25395344-25395387)
chr3 (18-89)||(47531898-47531969)
chr3 (17-89)||(14623834-14623906)
chr3 (57-118)||(54868930-54868995)
chr3 (17-89)||(13898050-13898122)
chr3 (52-88)||(41080742-41080778)
[»] scaffold0018 (1 HSPs)
scaffold0018 (9-89)||(152531-152611)
[»] scaffold0316 (1 HSPs)
scaffold0316 (17-79)||(17097-17159)


Alignment Details
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 43490234 - 43490119
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||    
T  43490234 gagaagaagaaagataaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgttt 43490135  T
Q  105 atgtatcataactcat 120  Q
    ||||||||||||||||    
T  43490134 atgtatcataactcat 43490119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 2997474 - 2997554
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  2997474 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgta 2997554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 38732467 - 38732354
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || ||||    ||| ||||||| |||    
T  38732467 gagaagaagaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgttt 38732368  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  38732367 atgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 45097722 - 45097835
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||    ||||||||| | |||    
T  45097722 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgttt 45097821  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  45097822 atgtatcataactc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 40613898 - 40614005
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||    ||||||||| | | ||||||||||    
T  40613898 aaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 40613997  T
Q  114 aactcatg 121  Q
    ||||||||    
T  40613998 aactcatg 40614005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 13365466 - 13365389
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggt 86  Q
    |||| ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  13365466 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggt 13365389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 9058584 - 9058480
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  9058584 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 9058485  T
Q  114 aactc 118  Q
     ||||    
T  9058484 tactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 2533227 - 2533157
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||||||||||| |||||||||||||||| |||| || |||||||||||||||| ||||||||||| ||||    
T  2533227 aaagaaaaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgt-ggtgtcaaaggatgta 2533157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 3034970 - 3035033
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgt 72  Q
    |||| ||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  3034970 gagaagaagaaagagaaagtatacttgtgcggggtccatatgaccacatgtcagatttttgtgt 3035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 28863559 - 28863460
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  28863559 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 13438447 - 13438341
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||| ||||    ||||||||||| | ||||||||||    
T  13438447 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcat 13438348  T
Q  114 aactcat 120  Q
     ||||||    
T  13438347 tactcat 13438341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 19930816 - 19930925
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| |||||||  |||||||||||| | ||| | || |||||||||||||||||| ||||||||||||||    ||||||||||| | ||||||||||    
T  19930816 aaagagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T
Q  114 aactcatggg 123  Q
     | |||||||    
T  19930916 tattcatggg 19930925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 33436095 - 33436200
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatca 112  Q
    |||||| ||||||| ||||||||||||| |  || | || ||| |||||||||||||||||||||||||||||    ||||||||||| | |||||||||    
T  33436095 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatca 33436194  T
Q  113 taactc 118  Q
    | ||||    
T  33436195 ttactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 42257297 - 42257233
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaa 82  Q
    ||||| ||||||| ||||||||||||| || ||||||| |||||||||||| |||||||||||||    
T  42257297 aaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaa 42257233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 10249378 - 10249482
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||||||||||| | ||||||||||    
T  10249378 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcat 10249477  T
Q  114 aactc 118  Q
     ||||    
T  10249478 tactc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 38273138 - 38273209
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| || |||||||||| || |||| || |||||||||||||||||||||| ||||||||||    
T  38273138 aaagagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgta 38273209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 28381651 - 28381757
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||| ||| || || | || ||||||||||||||||||||||| || ||||||    ||||||||||| | ||||||||||    
T  28381651 aaagagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcat 28381750  T
Q  114 aactcat 120  Q
     ||||||    
T  28381751 tactcat 28381757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 32505650 - 32505748
Alignment:
Q  24 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| ||||    
T  32505650 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 3738033 - 3737986
Alignment:
Q  32 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtc 79  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  3738033 cttgtgcggggtccacatgaccacatgtcagatttttgtgtgggtgtc 3737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 7465731 - 7465802
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| |||||| |||||| |  || | || |||||||||||||||||||||||||||||||||    
T  7465731 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 7465802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 17473124 - 17473053
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||||||||    
T  17473124 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 17473053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 15428757 - 15428840
Alignment:
Q  39 ggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    ||||| || |||||||||||||||||||||||||| |||| || |||||||    ||| ||||| | |||||||||||||||||    
T  15428757 ggggtttacatggccacatgtcagatttttgtgtgagtgttaaggggtgtatggccacataaggatgtttatgtatcataactc 15428840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 17820034 - 17820071
Alignment:
Q  52 ccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||||||||||||||||||||||||||| |||||||    
T  17820034 ccacatgtcagatttttgtgtgggtgtcaaggggtgta 17820071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 26891534 - 26891604
Alignment:
Q  52 ccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||||||||||||||||||||||||||| | |||||||    |||||||||||   |||||||||||||||    
T  26891534 ccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 40701543 - 40701477
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 119  Q
    |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| |||||    
T  40701543 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 40701477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 5574484 - 5574555
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| |||||||||| || |  || | || |||||||||||| ||||||||||||||||||||    
T  5574484 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgta 5574555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 27864810 - 27864702
Alignment:
Q  16 agaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatc 111  Q
    ||||||| ||||||| ||| ||||||||| |  ||   || |||||||||||||||||| ||||||||||||||    ||| ||||||| | ||||||||    
T  27864810 agaaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatc 27864711  T
Q  112 ataactcat 120  Q
    || ||||||    
T  27864710 attactcat 27864702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 30915567 - 30915463
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||| ||||||| |  || | || |||||||||||| |||||| |||||||||||||    ||||||||||| | ||||||||||    
T  30915567 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcat 30915468  T
Q  114 aactc 118  Q
     ||||    
T  30915467 tactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 36168940 - 36168869
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||| | ||||||||||||| || ||||||| ||||| ||||||||||||| || ||||| ||||    
T  36168940 aaagagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgta 36168869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 4060750 - 4060684
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 119  Q
    |||||||||||||||||| ||||||| ||||||    ||||||||||| | |||||||||| |||||    
T  4060750 tgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactca 4060684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 41575243 - 41575170
Alignment:
Q  17 gaaagaaaaagtgtacttgtgc-ggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||| ||||||| ||||||  |||||| | ||| |||||||||| |||||||||||  ||||||||||||||    
T  41575243 gaaagagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgta 41575170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 20700920 - 20700848
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||| ||||||| ||| ||||||||| |  || | || |||||||||||||||| || |||||||||||||    
T  20700920 gaaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgta 20700848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 33436316 - 33436244
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||| ||||||| |||||||   ||| | |||| ||| |||||||||||| ||||||||||||| ||||||    
T  33436316 gaaagagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgta 33436244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 15508011 - 15508125
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||    
T  15508011 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 15508110  T
Q  105 atgtatcataactca 119  Q
    |||||||||||||||    
T  15508111 atgtatcataactca 15508125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 15990029 - 15990142
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||    
T  15990029 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 15990128  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  15990129 atgtatcataactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 30341347 - 30341460
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||    
T  30341347 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 30341446  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  30341447 atgtatcataactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 4231661 - 4231547
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||    ||||||| | | |||    
T  4231661 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgttt 4231562  T
Q  105 atgtatcataactca 119  Q
    ||| |||||||||||    
T  4231561 atgaatcataactca 4231547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 32869782 - 32869676
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||| |    
T  32869782 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctt 32869683  T
Q  114 aactcat 120  Q
     ||||||    
T  32869682 tactcat 32869676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 31109396 - 31109467
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||||||| |||||||||||  || | || |||||||||||||||||| ||||||||||||||    
T  31109396 aaagagaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtggatgtcaaagggtgta 31109467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 31976352 - 31976248
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||  || || |||| |||||||||||||||||||||| ||||||| ||    ||||||||| | | ||||||||||    
T  31976352 aaagagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcat 31976253  T
Q  114 aactc 118  Q
    |||||    
T  31976252 aactc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 22880654 - 22880753
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || ||||||| |||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  22880654 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 17598658 - 17598552
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||| | ||||    ||||||||||| | ||||||||||    
T  17598658 aaagagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 17598559  T
Q  114 aactcat 120  Q
     ||||||    
T  17598558 tactcat 17598552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 11427722 - 11427651
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||| ||||    
T  11427722 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgta 11427651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 23128162 - 23128194
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||||||||||||||||||||||||| ||||    
T  23128162 tgtcagatttttgtgtgggtgtcaaaggatgta 23128194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 31110757 - 31110859
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||| ||||| || |||  || |||||||||||  |||| |||||||||||||||    ||||||||| | | ||||||||||    
T  31110757 aaagagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttt--tgtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 31110854  T
Q  114 aactc 118  Q
    |||||    
T  31110855 aactc 31110859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 31953061 - 31953097
Alignment:
Q  53 cacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||||||||||||| |||||||||||| |||||||    
T  31953061 cacatgtcagatttttatgtgggtgtcaaggggtgta 31953097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 50590987 - 50591101
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||    
T  50590987 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 50591086  T
Q  105 atgtatcataactca 119  Q
    |||||||||||||||    
T  50591087 atgtatcataactca 50591101  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 41608480 - 41608594
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||||    ||||||||| | |||    
T  41608480 gagaagaagaaagagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgttt 41608579  T
Q  105 atgtatcataactca 119  Q
    |||||||||||||||    
T  41608580 atgtatcataactca 41608594  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 5958987 - 5959100
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||||||    ||| ||||||| |||    
T  5958987 gagaagaagaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgttt 5959086  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  5959087 atgtatcataactc 5959100  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 47748555 - 47748441
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||| |||||||||||| || ||||||||||||||||||||||| | |||||||| |||||||||    |||||||||||||||    
T  47748555 gagaagaagaaagagaaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtc-aagggtgtattgccacctaagggtattt 47748457  T
Q  105 atgtatcataactcat 120  Q
    ||||||||||||||||    
T  47748456 atgtatcataactcat 47748441  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 44332358 - 44332430
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaa 81  Q
    |||| ||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  44332358 gagaagaagaaagagaaagtatacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgtcaa 44332430  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 32813351 - 32813247
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| || || |||| |||||||||||||||||||||| ||||||||||    ||||||||| | | ||||||||||    
T  32813351 aaagagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 32813252  T
Q  114 aactc 118  Q
    |||||    
T  32813251 aactc 32813247  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 3000423 - 3000319
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||| ||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||    
T  3000423 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcat 3000324  T
Q  114 aactc 118  Q
     ||||    
T  3000323 tactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 49811523 - 49811594
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||||||||| ||||||||||| || |||||||||||||||||| ||||||| ||||||    
T  49811523 aaagagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgta 49811594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 2582013 - 2581915
Alignment:
Q  24 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  2582013 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 2581915  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 9474872 - 9474977
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| |||||||  |||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  9474872 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 9474971  T
Q  114 aactca 119  Q
     |||||    
T  9474972 tactca 9474977  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 45044571 - 45044660
Alignment:
Q  33 ttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||||||||||| || |||| ||||||||||||||||| ||||||||||| ||||||    |||||||||  || |||||||||||||||    
T  45044571 ttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataactc 45044660  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 26440838 - 26440767
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||| |||||| || || ||||||| |||||||||||||||||||||| ||||||||||    
T  26440838 aaagagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgta 26440767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 38595258 - 38595154
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||| ||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||| ||| ||||||||||||    
T  38595258 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcat 38595159  T
Q  114 aactc 118  Q
     ||||    
T  38595158 tactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 47452316 - 47452422
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||||||| || |  || | || ||| |||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  47452316 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 47452415  T
Q  114 aactcat 120  Q
     ||||||    
T  47452416 tactcat 47452422  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 48716278 - 48716383
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||| ||||||| ||||||    ||||||||||| | ||||||||||    
T  48716278 aaagataaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcat 48716377  T
Q  114 aactca 119  Q
     |||||    
T  48716378 tactca 48716383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 37926434 - 37926538
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||||||||| |||| || || ||||||| |||||||||||| ||||||||| ||| | ||||    ||||||| | ||| ||||||||||    
T  37926434 aaagagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcat 37926533  T
Q  114 aactc 118  Q
    |||||    
T  37926534 aactc 37926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 38632317 - 38632421
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||||||||||| ||||||||||||| |  || | || |||||||||||||||||| ||| ||| ||||||    ||||||||||| | ||||||||||    
T  38632317 aaagaaaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcat 38632416  T
Q  114 aactc 118  Q
     ||||    
T  38632417 tactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 41758909 - 41758838
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| |||||||  |||||||||||| || || | || |||||||||||||||||| ||||||||||||||    
T  41758909 aaagagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgta 41758838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 50630562 - 50630458
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || ||||||||||||||||||||  |||||| ||||    ||||||||||||| ||||||||||    
T  50630562 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcat 50630463  T
Q  114 aactc 118  Q
     ||||    
T  50630462 tactc 50630458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 11152388 - 11152445
Alignment:
Q  32 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||||||||||||| ||| | || |||||||||||||||||| |||| |||||||||    
T  11152388 cttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgta 11152445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 27564731 - 27564837
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  ||   || |||||||||||||||||||||||||| ||||||    ||||||||| | | ||||||||||    
T  27564731 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcat 27564830  T
Q  114 aactcat 120  Q
     ||||||    
T  27564831 tactcat 27564837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 51898685 - 51898750
Alignment:
Q  24 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||||||||    
T  51898685 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 51898750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 43236 - 43165
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||||||||| ||| |  || | || |||||||||||||||||||||||||||| ||||    
T  43236 aaagagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgta 43165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 8346384 - 8346455
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||||||| ||||| |  || | || |||||||||||||||||||||||||| ||||||    
T  8346384 aaagagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgta 8346455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 44548372 - 44548443
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||| ||||| ||||||    
T  44548372 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgta 44548443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 37649268 - 37649231
Alignment:
Q  52 ccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  37649268 ccacgtgtcagatttttgtgtgggtgtcaaagagtgta 37649231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 13414822 - 13414794
Alignment:
Q  61 agatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||||||||||||||||||||||||||    
T  13414822 agatttttgtgtgggtgtcaaagggtgta 13414794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 44454084 - 44454020
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaa 81  Q
    |||||||||||||| |||||| ||| || |  |  ||||||||||||||||||||||||| ||||    
T  44454084 gaaagaaaaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaa 44454020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 16383490 - 16383377
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||    
T  16383490 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 16383391  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  16383390 atgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 24307780 - 24307893
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||    ||||||||||| |||    
T  24307780 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgttt 24307879  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  24307880 atgtatcataactc 24307893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 34307329 - 34307216
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| |||||||    ||||||||||| |||    
T  34307329 gagaagaagaaagagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 34307230  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  34307229 atgtatcataactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 16056388 - 16056501
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||    ||| ||||| | |||    
T  16056388 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgttt 16056487  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  16056488 atgtatcataactc 16056501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 30479461 - 30479574
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| |||||||||||||||| |||| |||| |||||||||||||||||| ||||| ||||||||||||||    ||||||||||| |||    
T  30479461 gagaagaagaaagagaaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgttt 30479560  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  30479561 atgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 32032830 - 32032725
Alignment:
Q  16 agaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatc 111  Q
    ||||||| ||||||||||||||| || || ||||||||||||||||||||||||||||| |||||| || ||||    ||||||||||| ||||||||||    
T  32032830 agaaagagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatc 32032732  T
Q  112 ataactc 118  Q
    |||||||    
T  32032731 ataactc 32032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 40423939 - 40424044
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| | ||| | || |||||||||||||||||| ||||||||||||||    ||||||||||||| ||||||||||    
T  40423939 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcat 40424038  T
Q  114 aactca 119  Q
     |||||    
T  40424039 tactca 40424044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 10621083 - 10621185
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||||||| || || |||| || |||||||||||||||||||||||||||||||||    ||||||||| | | ||||||||||    
T  10621083 aaagagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T
Q  114 aac 116  Q
    |||    
T  10621183 aac 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 15048178 - 15048282
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| || |||| || |||||||||||||||| ||||||||||||||||    ||||||||| | | ||||||||||    
T  15048178 aaagagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 15048276  T
Q  114 aactca 119  Q
    ||||||    
T  15048277 aactca 15048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 24307710 - 24307629
Alignment:
Q  41 ggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||| |||||||||||| ||||||||||||||||||||||| || ||||    ||||||||||| |||||||||||||||||    
T  24307710 ggtccatatggccacatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 12831151 - 12831047
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  12831151 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcat 12831052  T
Q  114 aactc 118  Q
     ||||    
T  12831051 tactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 15197437 - 15197331
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    |||||||| || | ||||||||||    
T  15197437 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcat 15197338  T
Q  114 aactcat 120  Q
     ||||||    
T  15197337 tactcat 15197331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 1179936 - 1180040
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||||||  || | ||| | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  1179936 aaagagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 1180035  T
Q  114 aactc 118  Q
     ||||    
T  1180036 tactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 43414577 - 43414647
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgt 88  Q
    ||||| ||||||| |||||||||| || || || |||| ||| ||||||||||||||||||||||||||||    
T  43414577 aaagagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgt 43414647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 504117 - 504223
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| || |||| ||||||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||||||||||| | ||||||||||    
T  504117 aaagagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 504216  T
Q  114 aactcat 120  Q
     ||||||    
T  504217 tactcat 504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 8841427 - 8841500
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtac 90  Q
    |||||| ||||||| ||||||||||||| |  || | || ||| ||||||||||||||||||||||||||||||    
T  8841427 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtac 8841500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 34012292 - 34012398
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||||||| || |  || | || ||||| |||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  34012292 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 34012391  T
Q  114 aactcat 120  Q
     ||||||    
T  34012392 tactcat 34012398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 10284626 - 10284731
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatca 112  Q
    |||||| ||||||| ||||||||||||| |  || | || ||||| ||||||||||||||||||||| |||||    ||| ||||||| | |||||||||    
T  10284626 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatca 10284725  T
Q  113 taactc 118  Q
    ||||||    
T  10284726 taactc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 14548026 - 14547929
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatc 111  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||||||||||| | ||||||||    
T  14548026 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatc 14547929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 32707990 - 32708061
Alignment:
Q  9 gagatgaagaaagaaaaagtgt--acttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgt 78  Q
    |||| ||||||||| |||||||  |||||||||||||| |||| ||||||| |||||||||||| |||||||    
T  32707990 gagaagaagaaagagaaagtgtgtacttgtgcggggtccatatagccacatctcagatttttgtatgggtgt 32708061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 23122593 - 23122699
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||| ||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||| ||||||| | ||||||||||    
T  23122593 aaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcat 23122692  T
Q  114 aactcat 120  Q
     ||||||    
T  23122693 tactcat 23122699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 37038577 - 37038512
Alignment:
Q  24 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||||||||    
T  37038577 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 37038512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 5957895 - 5957863
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||||||||||||||||||||||||||||||    
T  5957895 tgtcagatttttgtgtgggtgtcaaagggtgta 5957863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 9122289 - 9122229
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgt 78  Q
    ||||| ||||||| |||||||||| || |  || | |||||||||||||||||||||||||    
T  9122289 aaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgt 9122229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 38229498 - 38229470
Alignment:
Q  52 ccacatgtcagatttttgtgtgggtgtca 80  Q
    |||||||||||||||||||||||||||||    
T  38229498 ccacatgtcagatttttgtgtgggtgtca 38229470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 44507122 - 44507187
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||||||||||||||||||||| |||| |||||    ||||||||||| | |||||||||| ||||    
T  44507122 tgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactc 44507187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 3921252 - 3921365
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||    
T  3921252 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 3921351  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  3921352 atgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 2252155 - 2252268
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||| | |||    
T  2252155 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgttt 2252254  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  2252255 atgtatcataactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 39688889 - 39688997
Alignment:
Q  14 gaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgta 109  Q
    ||||||||| ||||||||||| ||||||||  ||||| |||||| ||||||||||||||||||||||| || ||||    ||| ||||||| ||||||||    
T  39688889 gaagaaagagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgta 39688988  T
Q  110 tcataactc 118  Q
    |||||||||    
T  39688989 tcataactc 39688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 28177879 - 28177773
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| |||||||  |||||||||||| || || |||| |||||||||||||||||||||||||||||||||    ||||||||| | | ||||||||||    
T  28177879 aaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 28177780  T
Q  114 aactcat 120  Q
    |||||||    
T  28177779 aactcat 28177773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 42414298 - 42414369
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||||||||||    
T  42414298 aaagataaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 42414369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 18520880 - 18520979
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  18520880 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 26720620 - 26720515
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||||||| || || ||||||| |||||||||||| ||| ||||| ||||||||||    ||||||||| | | ||||||||||    
T  26720620 aaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26720521  T
Q  114 aactca 119  Q
    ||||||    
T  26720520 aactca 26720515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 26990369 - 26990264
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||||||| || || ||||||| |||||||||||| ||| ||||| ||||||||||    ||||||||| | | ||||||||||    
T  26990369 aaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26990270  T
Q  114 aactca 119  Q
    ||||||    
T  26990269 aactca 26990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 15409614 - 15409710
Alignment:
Q  26 agtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    ||||| ||||||||||||| || |||| || |||||||||||||||||||||||||||  ||||    ||||||||| | | |||||||||||||||    
T  15409614 agtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 33149634 - 33149740
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||||||| || |  || | || ||||| |||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  33149634 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 33149733  T
Q  114 aactcat 120  Q
     ||||||    
T  33149734 tactcat 33149740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 40145511 - 40145405
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||| ||| ||||||||||    ||||||||||| | ||||||||||    
T  40145511 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcat 40145412  T
Q  114 aactcat 120  Q
     ||||||    
T  40145411 tactcat 40145405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 6679787 - 6679731
Alignment:
Q  33 ttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||||||||| || || |||| |||||||||||||||||||||||||| ||||||    
T  6679787 ttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgta 6679731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 2740378 - 2740307
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||||||||    
T  2740378 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 2740307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 36732938 - 36733009
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||||||||||||| |  || | |  |||||||||||||||||||||||||||||||||    
T  36732938 aaagagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgta 36733009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 35785264 - 35785198
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 119  Q
    |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| |||||    
T  35785264 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 35785198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 35943927 - 35943992
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||||||||||||||||||||||||| | ||||    ||||||||||| | |||||||||||||||    
T  35943927 tgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 13811755 - 13811692
Alignment:
Q  19 aagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaa 82  Q
    |||| ||||||| ||||||||||||| |  || | || ||||||||||||||||||||||||||    
T  13811755 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaa 13811692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 14831912 - 14831812
Alignment:
Q  24 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 119  Q
    ||||||| |||||||||| || |  || | || |||||||||||| ||||||||||||||||||||    |||||||| || | |||||||||| |||||    
T  14831912 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactca 14831813  T
Q  120 t 120  Q
    |    
T  14831812 t 14831812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 36875644 - 36875698
Alignment:
Q  63 atttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    |||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 36875698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 22343474 - 22343361
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||    ||||||||||| |||    
T  22343474 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgttt 22343375  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  22343374 atgtatcataactc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 41915854 - 41915741
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    ||||||||||| |||    
T  41915854 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgttt 41915755  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  41915754 atgtatcataactc 41915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 38044310 - 38044197
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||    ||||||||||| |||    
T  38044310 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgttt 38044211  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  38044210 atgtatcataactc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 8238326 - 8238210
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----caccta-agggtatt 103  Q
    |||| ||||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||    |||||| ||||| ||    
T  8238326 gagaagaagaaagagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtt 8238227  T
Q  104 tatgtatcataactcat 120  Q
    |||||||||||||||||    
T  8238226 tatgtatcataactcat 8238210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 32564413 - 32564527
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    ||||||||  | |||    
T  32564413 gagaagaagaaagagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgttt 32564512  T
Q  105 atgtatcataactca 119  Q
    |||||||||||||||    
T  32564513 atgtatcataactca 32564527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 7728019 - 7727906
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||| ||||  ||||||  ||||||    ||||||||||| |||    
T  7728019 gagaagaagaaacagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgttt 7727920  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  7727919 atgtatcataactc 7727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 40846100 - 40846213
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| |||||||| |||||||||||| ||||  | |||||| |||||||||||||| |||||| |||||||    ||||||||| | |||    
T  40846100 gagaagaagaaagagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgttt 40846199  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  40846200 atgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 35522980 - 35522909
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| |||||||||| || |||||||||| |||||||||||||||||||||| ||| ||||||    
T  35522980 aaagagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgta 35522909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 46374812 - 46374902
Alignment:
Q  32 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgt----acacctaagggtatttatgtatcataactc 118  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||| |||||||||     ||||||||| | | |||||||||||||||    
T  46374812 cttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 38267144 - 38267039
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||| ||||||| | ||||||||||    
T  38267144 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcat 38267045  T
Q  114 aactca 119  Q
     |||||    
T  38267044 tactca 38267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 7389493 - 7389389
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || ||||||||||||||||||||||||||| |||||    ||||||||||| | ||||||||||    
T  7389493 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcat 7389394  T
Q  114 aactc 118  Q
     ||||    
T  7389393 tactc 7389389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 21234504 - 21234399
Alignment:
Q  19 aagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcata 114  Q
    |||| ||| ||| ||||||||||||  || |||| || ||||| ||||||||||| |||||||||||||||    ||||||||| | | |||||||||||    
T  21234504 aagagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcata 21234405  T
Q  115 actcat 120  Q
    ||||||    
T  21234404 actcat 21234399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 8080379 - 8080483
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||| ||| ||||||||||||||||    ||||||||||| | ||||||||||    
T  8080379 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 8080478  T
Q  114 aactc 118  Q
     ||||    
T  8080479 tactc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 27744336 - 27744375
Alignment:
Q  49 tggccacatgtcagatttttgtgtgggtgtcaaagggtgt 88  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  27744336 tggccacatgtcagatttttgtgtgggtatcaaagggtgt 27744375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 36361909 - 36362013
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||| |||||| |  || | || |||||||||||||||||||||||||||| ||||    ||||||||||| | ||||||||||    
T  36361909 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcat 36362008  T
Q  114 aactc 118  Q
     ||||    
T  36362009 tactc 36362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 36362130 - 36362026
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||| |||||| |  || | || |||||||||||||||||||||||||||| ||||    ||||||||||| | ||||||||||    
T  36362130 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcat 36362031  T
Q  114 aactc 118  Q
     ||||    
T  36362030 tactc 36362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 19329946 - 19329839
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  ||   || |||||||||||||||||||||||||| ||||||    ||||||||| | | ||||||||||    
T  19329946 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcat 19329847  T
Q  114 aactcatg 121  Q
     |||||||    
T  19329846 tactcatg 19329839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 26296734 - 26296644
Alignment:
Q  32 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    ||||||||||||| |||||||||| | |||||||||| ||||| ||| ||||||| ||    ||||||||| | | |||||||||||||||    
T  26296734 cttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactc 26296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 35137637 - 35137531
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| |||||||  |||||||||||| |  || | || ||| |||||||||||||||||||||||||||||    ||||||||||| | ||| ||||||    
T  35137637 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcat 35137538  T
Q  114 aactcat 120  Q
     ||||||    
T  35137537 tactcat 35137531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 36208278 - 36208173
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatca 112  Q
    |||||| ||| ||| ||||||| ||||| |  || ||||||||||| |||||||||||||||||| |  ||||    ||||||||||| | |||||||||    
T  36208278 gaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatca 36208179  T
Q  113 taactc 118  Q
    ||||||    
T  36208178 taactc 36208173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 3434666 - 3434595
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| |||||||||| || |  || | || |||||| ||||||||||||||||||||||||||    
T  3434666 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgta 3434595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 3694471 - 3694400
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| |||||||||| || | ||| | || |||||||||||||||||||||| ||| ||||||    
T  3694471 aaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgta 3694400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 38837321 - 38837217
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||| |||||  |||||||||    ||||||||||| | ||||||||||    
T  38837321 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcat 38837222  T
Q  114 aactc 118  Q
     ||||    
T  38837221 tactc 38837217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 3784099 - 3784000
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||| | ||||    ||||||||||| | ||||||||||    
T  3784099 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 43317547 - 43317592
Alignment:
Q  33 ttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgt 78  Q
    ||||| |||||||| || ||||||||||||| ||||||||||||||    
T  43317547 ttgtgtggggtctagattgccacatgtcagaattttgtgtgggtgt 43317592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 46033831 - 46033901
Alignment:
Q  52 ccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||| |||||||||||| ||||||||| ||||||||||    ||||||||  ||| |||||||||||||||    
T  46033831 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactc 46033901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 19436222 - 19436254
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||||||||||||||||||||||| ||||||    
T  19436222 tgtcagatttttgtgtgggtgtcaaaaggtgta 19436254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 19670703 - 19670816
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||    ||||||||||| |||    
T  19670703 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgttt 19670802  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  19670803 atgtatcataactc 19670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 55475304 - 55475191
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    ||||||||| | |||    
T  55475304 gagaagaagaaagagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgttt 55475205  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  55475204 atgtatcataactc 55475191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 47986315 - 47986208
Alignment:
Q  15 aagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtat 110  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||    ||||||||||| |||||||||    
T  47986315 aagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtat 47986216  T
Q  111 cataactc 118  Q
    ||||||||    
T  47986215 cataactc 47986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 17983730 - 17983810
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  17983730 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgta 17983810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 29547946 - 29548059
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| || ||||    ||||||||| | |||    
T  29547946 gagaagaagaaagaaaaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgttt 29548045  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  29548046 atgtatcataactc 29548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 32767071 - 32766958
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||||    |||||||| || |||    
T  32767071 gagaagaagaaagagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgttt 32766972  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  32766971 atgtatcataactc 32766958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 50813879 - 50813992
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| |||||||    |||||||| || |||    
T  50813879 gagaagaagaaagagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgttt 50813978  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  50813979 atgtatcataactc 50813992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 18924482 - 18924597
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||||||||| ||  |||| |||||||||||||||||||||||| | |||| |||||||    |||||||||||||||    
T  18924482 gagaagaagaaagagaaagtgtacttgtgcggagttcatattgccacatgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtattt 18924581  T
Q  105 atgtatcataactcat 120  Q
    ||| ||||||||||||    
T  18924582 atggatcataactcat 18924597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 29589727 - 29589831
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta---cacctaagggtattta 105  Q
    |||| ||||||||| |||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |||||||   || |||||||| ||||    
T  29589727 gagaagaagaaagagaaagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgtattgcaactaagggtgttta 29589826  T
Q  106 tgtat 110  Q
    |||||    
T  29589827 tgtat 29589831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 55079700 - 55079814
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcgggg-tctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatt 103  Q
    |||| ||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||| ||||||||||  ||||||    ||||||||||| ||    
T  55079700 gagaagaagaaagagaaagtgtacttgtgtgggggtccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtt 55079799  T
Q  104 tatgtatcataactc 118  Q
    |||||||||||||||    
T  55079800 tatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 8343150 - 8343263
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||    ||||||||| | |||    
T  8343150 gagaagaagaaagagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgttt 8343249  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  8343250 atgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 44536733 - 44536845
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||| |||| |||||||||    |||||||  || |||    
T  44536733 gagaagaagaaagagaaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtc-aagggtgtattgccacctaaaagtgttt 44536831  T
Q  105 atgtatcataactc 118  Q
    ||||||||||||||    
T  44536832 atgtatcataactc 44536845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 6034148 - 6034043
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||||||| || |  || | ||||||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  6034148 aaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 6034049  T
Q  114 aactca 119  Q
     |||||    
T  6034048 tactca 6034043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 31910296 - 31910191
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| || |||| |  ||||||||||||||||||||||||||| |||||    ||||||||| | | ||||||||||    
T  31910296 aaagagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcat 31910197  T
Q  114 aactca 119  Q
    ||||||    
T  31910196 aactca 31910191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 11511458 - 11511563
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||| ||||||||||||||||||||    ||||||||||| | ||||||||||    
T  11511458 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 11511557  T
Q  114 aactca 119  Q
     |||||    
T  11511558 tactca 11511563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 50052423 - 50052495
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    
T  50052423 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 50052495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 480443 - 480547
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||| ||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  480443 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcat 480542  T
Q  114 aactc 118  Q
     ||||    
T  480543 tactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 48183045 - 48183116
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    
T  48183045 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 48183116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 40574844 - 40574777
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactcat 120  Q
    |||||||||||||||||||||||||||||||||    ||||||||| | | |||||||||||||||||    
T  40574844 tgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactcat 40574777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 29977990 - 29977918
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||| ||||||| |||||| |||||| ||||| | || |||||||||||||||||||||| || |||||||    
T  29977990 gaaagagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgta 29977918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 54473529 - 54473634
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || ||| |||||||||||||||||||||| ||||||    ||||||||||| | ||||||||||    
T  54473529 aaagataaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcat 54473628  T
Q  114 aactca 119  Q
     |||||    
T  54473629 tactca 54473634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 41236451 - 41236347
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||| ||||||| ||||||    ||||||||||| | ||||||||||    
T  41236451 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 41236352  T
Q  114 aactc 118  Q
     ||||    
T  41236351 tactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 41823986 - 41823920
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagg 84  Q
    ||||| ||||||| ||||||||||||| || || | || |||||||||||||||||||||| |||||    
T  41823986 aaagagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgttaaagg 41823920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 50526201 - 50526238
Alignment:
Q  52 ccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||| |||||||||||||||||||||||||||||||||    
T  50526201 ccacgtgtcagatttttgtgtgggtgtcaaagggtgta 50526238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 18769214 - 18769142
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||| ||| |||| ||||| ||||| || ||| |||| |||||||||||||||||||||| | ||||||||    
T  18769214 gaaagagaaaatgtatttgtgtggggtttacatgaccacgtgtcagatttttgtgtgggtgttagagggtgta 18769142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 42044363 - 42044467
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || ||||||||||||||||||||||  |||| ||||    ||||||||||| | ||||||||||    
T  42044363 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcat 42044462  T
Q  114 aactc 118  Q
     ||||    
T  42044463 tactc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 3481719 - 3481652
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactcat 120  Q
    ||||||||||||||||||||||||||| |||||    ||||||| ||| | |||||||||| ||||||    
T  3481719 tgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactcat 3481652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 56300160 - 56300225
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaa 82  Q
    |||||| |||||||  |||||| || |  ||||| ||||||||||||||||||||||| |||||||    
T  56300160 gaaagagaaagtgtgtttgtgcaggattcatatgaccacatgtcagatttttgtgtggatgtcaaa 56300225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 23608300 - 23608268
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||||||||||||||||||||||| ||||||    
T  23608300 tgtcagatttttgtgtgggtgtcaaatggtgta 23608268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 29239991 - 29239886
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatca 112  Q
    |||||| ||||||| |||||| |||||| |  || | || ||| |||||||||||||| ||||||| ||||||    ||||||||||| | |||||||||    
T  29239991 gaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatca 29239892  T
Q  113 taactc 118  Q
    | ||||    
T  29239891 ttactc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 36331316 - 36331394
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtg 87  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  36331316 gagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtg 36331394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 45058540 - 45058653
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtattt 104  Q
    |||| ||||||||| ||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||    ||||||||||| |||    
T  45058540 gagaagaagaaagagaaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtc-aagggtgtattgccacctaagggtgttt 45058638  T
Q  105 atgtatcataactca 119  Q
    |||||||||||||||    
T  45058639 atgtatcataactca 45058653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 51419356 - 51419427
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||    
T  51419356 aaagagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgta 51419427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 26141528 - 26141634
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| |||||| |||||| || || |||| |||||||||||||||||||||| ||||||||||    ||||||||| | | ||||||||||    
T  26141528 aaagagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26141627  T
Q  114 aactcat 120  Q
    |||||||    
T  26141628 aactcat 26141634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 53982115 - 53982009
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  53982115 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 53982016  T
Q  114 aactcat 120  Q
     ||||||    
T  53982015 tactcat 53982009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 8076498 - 8076393
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatca 112  Q
    |||||| ||||||| ||||||||||||| |  || | || ||| |||||||||||||||||||||||||||||    ||||||||||| |||||||||||    
T  8076498 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatca 8076399  T
Q  113 taactc 118  Q
    | ||||    
T  8076398 ttactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 31456793 - 31456722
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||||||||||    
T  31456793 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 31456722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 42823218 - 42823114
Alignment:
Q  15 aagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtat 110  Q
    |||||||| ||||| ||||| ||||||||| ||||| |||||||||| |||||| |||||||||||| |||||||    ||| ||| ||| |||||||||    
T  42823218 aagaaagagaaagtatacttatgcggggtccatatgaccacatgtcaaatttttttgtgggtgtcaaggggtgtattaccacataatggtgtttatgtat 42823119  T
Q  111 cataa 115  Q
    |||||    
T  42823118 cataa 42823114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 27714888 - 27714958
Alignment:
Q  19 aagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||| ||||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||||||||||    
T  27714888 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 27714958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 26754800 - 26754698
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatca 112  Q
    |||||| ||| ||| ||||||||||||| || || ||||||||||||||||||||||| |||| |||||||||    ||||||||||| | |||| ||||    
T  26754800 gaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatca 26754701  T
Q  113 taa 115  Q
    |||    
T  26754700 taa 26754698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 20764911 - 20765016
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||| ||||||| || ||||||| |||||||||||||||||||||| |||| |||||    ||||||||| | | ||||| ||||    
T  20764911 aaagagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcat 20765010  T
Q  114 aactca 119  Q
    ||||||    
T  20765011 aactca 20765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 33644304 - 33644199
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    |||| |||||| | ||||||||||    
T  33644304 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcat 33644205  T
Q  114 aactca 119  Q
     |||||    
T  33644204 tactca 33644199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 11347918 - 11348022
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||| ||| ||||| || ||||||| |||||||||||||||||| ||||||||| ||||    ||||||||| | | ||||||||||    
T  11347918 aaagagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcat 11348017  T
Q  114 aactc 118  Q
    |||||    
T  11348018 aactc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 11907475 - 11907371
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||| ||| ||||||||||||| ||||| |||||||||||||||||||||| ||||  | | |||||    ||||||||||| | ||||||||||    
T  11907475 aaagagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcat 11907376  T
Q  114 aactc 118  Q
    |||||    
T  11907375 aactc 11907371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 30801728 - 30801828
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatca 112  Q
    |||||| ||| ||| |||||| |||||| ||||| | |||||||| |||||||||||||| ||||||||||||    ||||||||||| | |||||||||    
T  30801728 gaaagagaaaatgtgcttgtgtggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatca 30801827  T
Q  113 t 113  Q
    |    
T  30801828 t 30801828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 41189760 - 41189864
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||||||||||| || ||||||| ||||| |||||| ||||||||||||| | ||||    ||||||||| | | ||||||||||    
T  41189760 aaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcat 41189859  T
Q  114 aactc 118  Q
    |||||    
T  41189860 aactc 41189864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 52629404 - 52629304
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| ||||||| ||||| ||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  52629404 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T
Q  114 a 114  Q
    |    
T  52629304 a 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 48587087 - 48587186
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 113  Q
    ||||| |||||||||||||||||| || |  || | || |||||||||||| ||| ||||||||||||||||    ||||||||||||| ||||||||||    
T  48587087 aaagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcat 48587186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 11095388 - 11095453
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  11095388 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 33118886 - 33118951
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    ||||| |||||||||||||||||||||||||||    ||||||||||| | |||||||||||||||    
T  33118886 tgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

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Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 36707459 - 36707524
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||||||||||||||||| ||||||||||||||    ||||||||||||| |||||||||| ||||    
T  36707459 tgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactc 36707524  T

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Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 49607479 - 49607414
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  49607479 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 49607414  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 25395344 - 25395387
Alignment:
Q  33 ttgtgcggggtctatatggccacatgtcagatttttgtgtgggt 76  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  25395344 ttgtgtggggtctatatagccacatgtcagatttttgtgtgggt 25395387  T

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Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 47531969 - 47531898
Alignment:
Q  18 aaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    ||||| ||||||| ||||||||||||  |||||||||| ||||||||| |||||||| ||| ||| ||||||    
T  47531969 aaagagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgta 47531898  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 14623834 - 14623906
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||| ||||||| |||||| | |||| | |||  |||||||||||||||| |||||||||||| |||||||    
T  14623834 gaaagagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgta 14623906  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 54868930 - 54868995
Alignment:
Q  57 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 118  Q
    |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| ||||    
T  54868930 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 54868995  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 13898050 - 13898122
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||||| ||||||| |||||| | |||| | |||  ||| |||||||||||| |||||||||||| |||||||    
T  13898050 gaaagagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgta 13898122  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 41080778 - 41080742
Alignment:
Q  52 ccacatgtcagatttttgtgtgggtgtcaaagggtgt 88  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  41080778 ccacatatcagatttttgcgtgggtgtcaaagggtgt 41080742  T

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Target: scaffold0018 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 152611 - 152531
Alignment:
Q  9 gagatgaagaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 89  Q
    |||| ||||||||| |||||||| ||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||    
T  152611 gagaagaagaaagagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgta 152531  T

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Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 17159 - 17097
Alignment:
Q  17 gaaagaaaaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtc 79  Q
    |||||| ||| ||| ||||||||||||| || || ||||||||||||||||||||||| ||||    
T  17159 gaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtc 17097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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