View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0204_low_4 (Length: 261)
Name: NF0204_low_4
Description: NF0204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0204_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 38001237 - 38001429
Alignment:
| Q |
7 |
gaaaaatcatttgttgtaggagtacctagtttgcaagcatgttgtcaagaatgtaatattttagatgctcgagagataactctatatattcgtattaaat |
106 |
Q |
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| T |
38001237 |
gaaaaatcatttgttgtaggagtacctagtttgcaagcatgttgtcaagaatgtaatattttagatgctcgagagataactctatatattcgtattaaat |
38001336 |
T |
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| Q |
107 |
atattcaaaatatatttttatagaaccttaattttgaacgaatagtttgnnnnnnnnntgtataaagaaagacattcgaataataaatgatac |
199 |
Q |
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| T |
38001337 |
atattcaaaatatatttttatagaaccttaattttgaacgaatagtttgaaaaaaaaaagtataaagaaagacattcgaataataaatgatac |
38001429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 29273814 - 29273855
Alignment:
| Q |
210 |
cctaatttttgcgttcttgctggtttgtttcttgctgttctt |
251 |
Q |
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| T |
29273814 |
cctaatttttgtgttcttgctggtttgtttcttgctgttctt |
29273855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 55860750 - 55860710
Alignment:
| Q |
211 |
ctaatttttgcgttcttgctggtttgtttcttgctgttctt |
251 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
55860750 |
ctaatttttgtgttcttgctggtttgtttcttgctgttctt |
55860710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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