View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0206Ase20 (Length: 717)
Name: NF0206Ase20
Description: NF0206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0206Ase20 |
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Alignment Details
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 10 - 692
Target Start/End: Complemental strand, 10216883 - 10216200
Alignment:
| Q |
10 |
agcaacaccagtgggtacttccatgatatgcagcctaatgtatgagccaactggattacagtcttggctgttttctcgttccatttctaaggctttagca |
109 |
Q |
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| T |
10216883 |
agcaacaccagtgggtacttccatgatatgcagcctaatgtatgagccaactggaatacagtcttggctgttttctcgttccatttctaaggctttagca |
10216784 |
T |
|
| Q |
110 |
agaacctgcttttgtgttcttttgaaactatgataattataatttttgggataatcttgaggtagagattcctgataaaattagaaatgtcagannnnnn |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10216783 |
agaacctgcttttgtgttcttttgaaactatgataattataatttttgggataatcttgaggtagagattcctgataaaattagaaatgtcagatttttt |
10216684 |
T |
|
| Q |
210 |
ngctgttagtggcaacgagtaattaaagaataaccaaatgataaacataccataggatcccatatagaattccgaatagacttgagtcccttatattttg |
309 |
Q |
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| T |
10216683 |
tgctgttaatggcaacgactaattaaagaataagaaaatgataaacataccataggatcccatatagaattccgaatagacttgagtcccttatattttg |
10216584 |
T |
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| Q |
310 |
caaaccgtgtccgagctgggacatccaatggtgtatccacttcatcaggaaactctacaacaacaaacgaatatcaagcaacaaatcgtcaatacaataa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10216583 |
caaaccgtgtccgagctgggacatccaatggtgtatccacttcatcaggaaactctacaacaacaaacgaatatcaagcaacaaatcgtcaatacaataa |
10216484 |
T |
|
| Q |
410 |
aactgcaaatcttccacagacaggtacattccatgtcacttatggagaaattcccaacaaagtacaagttgtaggaaccagaaagtataaactggaataa |
509 |
Q |
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| T |
10216483 |
aactgcaaatcttccacagacaggtacattccatgtcacttacagagaaattcccaacaaagtacaagttgtaggaaccagaaagtataaaccggaataa |
10216384 |
T |
|
| Q |
510 |
gtacactttcaactttagaaagaccaaacacttggtggttttttctaataaaaaagcaagtgtgaccaaacatgagaacattaaatagaaaaaattaccc |
609 |
Q |
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| T |
10216383 |
gtacactttcaactttagaaagaccaaacacttagtggttttttctaataaaaaagcaagtgtgaccaaacatgagaacattaaatagaaaaaattaccc |
10216284 |
T |
|
| Q |
610 |
tcatctgcagcatgagcttcttt-attgccttgagttcatcttgnatcttctcttcagtcangtcatctacttcctgaaatcca |
692 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| |
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| T |
10216283 |
tcatctgcagcatgagcttctttaattgccttgagttcatcttgtatcttctcttcagtcatgtcatctacttcctaaaatcca |
10216200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 5587749 - 5587643
Alignment:
| Q |
79 |
gttttctcgttccatttctaaggctttagcaagaacctgcttttgtgttcttttgaaactatgataattataatttttgggataatcttgaggtagagat |
178 |
Q |
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||||||| |||||| |||||| |||||||||||||| || |||| ||||||| |||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
5587749 |
gttttcttgttccaattctaaagctttagcaagaacttgtttttc-gttctttagaaactatgataattaaaatttctgtgataatcttgaggtagagat |
5587651 |
T |
|
| Q |
179 |
tcctgata |
186 |
Q |
| |
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||| |||| |
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| T |
5587650 |
tccagata |
5587643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 5592710 - 5592604
Alignment:
| Q |
79 |
gttttctcgttccatttctaaggctttagcaagaacctgcttttgtgttcttttgaaactatgataattataatttttgggataatcttgaggtagagat |
178 |
Q |
| |
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||||||| |||||| |||||| |||||||||||||| || |||| ||||||| |||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
5592710 |
gttttcttgttccaattctaaagctttagcaagaacttgtttttc-gttctttagaaactatgataattaaaatttctgtgataatcttgaggtagagat |
5592612 |
T |
|
| Q |
179 |
tcctgata |
186 |
Q |
| |
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||| |||| |
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| T |
5592611 |
tccagata |
5592604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 53887023 - 53887215
Alignment:
| Q |
11 |
gcaacaccagtgggtacttccatgatatgcagcctaatgtatgagccaactggattacagtcttggctgttttctcgttccatttctaaggctttagcaa |
110 |
Q |
| |
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|||||| || |||| |||||| |||||||||||||| ||||||||||||| | |||||| | ||||||||| ||||| |||||| |||||||||| |
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| T |
53887023 |
gcaacagcactgggcacttccttgatatgcagcctagcatatgagccaactgaaacacagtcctctctgttttctttttccaattctaaagctttagcaa |
53887122 |
T |
|
| Q |
111 |
gaacctgcttttgtgttcttttgaaactatgataattataatttttgggataatcttgaggtagagattcctgataaaattagaaatgtcaga |
203 |
Q |
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|||| ||||||||| |||||| ||| ||| | | | |||| |||||| ||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
53887123 |
gaacatgcttttgtagtcttttaaaattatcaaactcataaattttggcataatcttgaggtagagattcctgatattattacaaatgtcaga |
53887215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 375
Target Start/End: Original strand, 53887305 - 53887392
Alignment:
| Q |
288 |
gacttgagtcccttatattttgcaaaccgtgtccgagctgggacatccaatggtgtatccacttcatcaggaaactctacaacaacaa |
375 |
Q |
| |
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|||||||||||| | |||||||||||||| ||| ||| || |||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
53887305 |
gacttgagtcccctgtattttgcaaaccgcttcctagccggaacatccaatggtgtatccacttcatcaggatactctacaccaacaa |
53887392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 691
Target Start/End: Original strand, 53887675 - 53887762
Alignment:
| Q |
605 |
taccctcatctgcagcatgagcttcttt-attgccttgagttcatcttgnatcttctcttcagtcangtcatctacttcctgaaatcc |
691 |
Q |
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||||||||||||||||||| |||||||| | | |||| ||||| ||||| |||||||| ||||| || |||||||||||| ||||| |
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| T |
53887675 |
taccctcatctgcagcatgtgcttctttaagttccttaagttcgtcttgtatcttctccctagtcatgttatctacttcctgtaatcc |
53887762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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