View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0206Ase6 (Length: 610)
Name: NF0206Ase6
Description: NF0206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0206Ase6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Complemental strand, 19583053 - 19582545
Alignment:
| Q |
12 |
cagcatcaaccatcaccagccaccatgtctcagcatcaaccatcaccagccaccatgtctcagcatcaagcatcaccagccgccacgtcgcagctgcaac |
111 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
19583053 |
cagcatcaaccatcaccagccgccacgtcgcagcatcaaccatcaccagccaccatgtcgcagcatcaaccatcaccagccgccacgtcgcagctgcaac |
19582954 |
T |
|
| Q |
112 |
aaccacctggctctcctttgctatcaccccaatactcttcaacacagccacaaccatcacctcaagactctccactaaagcgaaaacatccactacaaga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |
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|
| T |
19582953 |
aaccacctggctctcctttgctatcaccccaatactcttcaacacagccacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaaga |
19582854 |
T |
|
| Q |
212 |
tcctcagccatcatcaccaaagcgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19582853 |
tcctcagccatcatcaccaaagcgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatac |
19582754 |
T |
|
| Q |
312 |
gtttcatcgagctcatcagatcctctaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgacatcagacccttcacccgtct |
411 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19582753 |
atttcatcgagctcatcagaccctttaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtct |
19582654 |
T |
|
| Q |
412 |
catcgggatctccaccggatacattagaatcatcagcaagtaataatccctctgttactccgtcaccatgatagatgcaaataccacctctgagtccggt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
19582653 |
catcgggatctccaccggatacattagaatcatcagcaagtaataatccctctgttactccgtcaccatgacagatgcaaataccacctccgagtccggt |
19582554 |
T |
|
| Q |
512 |
tagttgttt |
520 |
Q |
| |
|
|||| |||| |
|
|
| T |
19582553 |
tagtagttt |
19582545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Original strand, 19590532 - 19591040
Alignment:
| Q |
12 |
cagcatcaaccatcaccagccaccatgtctcagcatcaaccatcaccagccaccatgtctcagcatcaagcatcaccagccgccacgtcgcagctgcaac |
111 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
19590532 |
cagcatcaaccatcaccagccgccacgtcgcagcatcaaccatcaccagccaccatgtcgcagcatcaaccatcaccagccgccacgtcgcagctgcaac |
19590631 |
T |
|
| Q |
112 |
aaccacctggctctcctttgctatcaccccaatactcttcaacacagccacaaccatcacctcaagactctccactaaagcgaaaacatccactacaaga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
19590632 |
aaccacctggctctcctttgctatcaccccaatactcttcaacacagccacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaaga |
19590731 |
T |
|
| Q |
212 |
tcctcagccatcatcaccaaagcgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19590732 |
tcctcagccatcatcaccaaagcgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatac |
19590831 |
T |
|
| Q |
312 |
gtttcatcgagctcatcagatcctctaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgacatcagacccttcacccgtct |
411 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19590832 |
atttcatcgagctcatcagaccctttaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtct |
19590931 |
T |
|
| Q |
412 |
catcgggatctccaccggatacattagaatcatcagcaagtaataatccctctgttactccgtcaccatgatagatgcaaataccacctctgagtccggt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
19590932 |
catcgggatctccaccggatacattagaatcatcagcaagtaataatccctctgttactccgtcaccatgacagatgcaaataccacctccgagtccggt |
19591031 |
T |
|
| Q |
512 |
tagttgttt |
520 |
Q |
| |
|
|||| |||| |
|
|
| T |
19591032 |
tagtagttt |
19591040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 19590498 - 19590595
Alignment:
| Q |
8 |
gtctcagcatcaaccatcaccagccaccatgtctcagcatcaaccatcaccagccaccatgtctcagcatcaagcatcaccagccgccacgtcgcagc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
19590498 |
gtctcagcatcaaccatcaccagccaccatgtcgcagcatcaaccatcaccagccgccacgtcgcagcatcaaccatcaccagccaccatgtcgcagc |
19590595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 522 - 604
Target Start/End: Original strand, 19586919 - 19586998
Alignment:
| Q |
522 |
cagaacattcttgatgaattctttaattaagggatgcttaattgtggctaatttccgatttatatattgatcaggttaaatta |
604 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||| ||| ||||| |
|
|
| T |
19586919 |
cagaacattcttcatgaattctttaattaagggatacttaattctggc---tttctgatttatatattgatcaagtttaatta |
19586998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 480
Target Start/End: Original strand, 19586793 - 19586883
Alignment:
| Q |
390 |
acatcagacccttcacccgtctcatcgggatctccaccggatacattagaatcatcagcaagtaataatccctctgttactccgtcaccat |
480 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||| |||||||||| | |||| |||||||| ||| || |||||||||||| |
|
|
| T |
19586793 |
acatcagaaccttcacccgtctcatcaggctctccaccggatttattagaatcaaccgcaacaaataatccttctattcctccgtcaccat |
19586883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 522 - 604
Target Start/End: Complemental strand, 19582525 - 19582446
Alignment:
| Q |
522 |
cagaacattcttgatgaattctttaattaagggatgcttaattgtggctaatttccgatttatatattgatcaggttaaatta |
604 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| || |||| |||| ||||||||||||||||| ||| ||||| |
|
|
| T |
19582525 |
cagaacattcttgatgaattcttttattaagggatactttgttttggc---tttctgatttatatattgatcaagtttaatta |
19582446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 522 - 604
Target Start/End: Original strand, 19591060 - 19591139
Alignment:
| Q |
522 |
cagaacattcttgatgaattctttaattaagggatgcttaattgtggctaatttccgatttatatattgatcaggttaaatta |
604 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| || |||| |||| ||||||||||||||||| ||| ||||| |
|
|
| T |
19591060 |
cagaacattcttgatgaattcttttattaagggatactttgttttggc---tttctgatttatatattgatcaagtttaatta |
19591139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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