View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0206Ase8 (Length: 453)

Name: NF0206Ase8
Description: NF0206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0206Ase8
NF0206Ase8
[»] chr5 (8 HSPs)
chr5 (17-446)||(20321705-20322149)
chr5 (135-360)||(15450989-15451214)
chr5 (17-106)||(20326419-20326508)
chr5 (151-417)||(9281475-9281741)
chr5 (220-345)||(30997676-30997801)
chr5 (290-385)||(9844876-9844971)
chr5 (135-210)||(36731139-36731214)
chr5 (135-188)||(23883276-23883329)
[»] chr6 (4 HSPs)
chr6 (10-256)||(5918476-5918722)
chr6 (10-138)||(5922163-5922291)
chr6 (139-353)||(14817107-14817321)
chr6 (250-399)||(34069034-34069183)
[»] chr1 (7 HSPs)
chr1 (45-446)||(32610395-32610817)
chr1 (135-363)||(52779973-52780201)
chr1 (139-353)||(2361866-2362080)
chr1 (305-385)||(40336378-40336458)
chr1 (135-210)||(37736604-37736679)
chr1 (290-384)||(47705286-47705380)
chr1 (135-189)||(9801604-9801658)
[»] chr3 (9 HSPs)
chr3 (52-332)||(10545464-10545734)
chr3 (135-363)||(12298693-12298921)
chr3 (135-354)||(44666269-44666488)
chr3 (139-348)||(8838342-8838551)
chr3 (135-363)||(19584470-19584698)
chr3 (176-259)||(5686772-5686855)
chr3 (176-318)||(5665331-5665473)
chr3 (328-374)||(10560346-10560392)
chr3 (337-405)||(18962714-18962782)
[»] scaffold0329 (1 HSPs)
scaffold0329 (135-363)||(13302-13530)
[»] chr4 (7 HSPs)
chr4 (135-351)||(22645667-22645883)
chr4 (139-353)||(10869191-10869405)
chr4 (139-353)||(10655046-10655260)
chr4 (139-353)||(5241649-5241863)
chr4 (134-258)||(23165215-23165339)
chr4 (139-201)||(14041280-14041342)
chr4 (139-189)||(19799186-19799236)
[»] chr8 (5 HSPs)
chr8 (139-354)||(19996466-19996681)
chr8 (136-267)||(15885162-15885293)
chr8 (139-354)||(15760630-15760845)
chr8 (139-353)||(614302-614516)
chr8 (135-189)||(18550377-18550431)
[»] scaffold0655 (1 HSPs)
scaffold0655 (320-385)||(21-86)
[»] chr2 (4 HSPs)
chr2 (140-207)||(19913978-19914045)
chr2 (135-210)||(23683060-23683135)
chr2 (305-348)||(28154382-28154425)
chr2 (142-207)||(13486828-13486893)
[»] chr7 (2 HSPs)
chr7 (290-384)||(38845207-38845301)
chr7 (140-385)||(8854506-8854751)
[»] scaffold0209 (1 HSPs)
scaffold0209 (139-353)||(27086-27300)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 446
Target Start/End: Original strand, 20321705 - 20322149
Alignment:
Q  17 tacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaagt-------- 108  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| ||| |  ||||||||||||| ||||||||||||||||||||||| |            
T  20321705 tacaagatgtttgtatacaagagctagcgtacatgataagctatgatagcagagaaacactatagtataactaaaacactctaaactcaattacttgagg 20321804  T
Q  109 -------tatttcatccttatgtgtatcatccgatagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaa 201  Q
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |||||||| ||||||||||||    
T  20321805 tacaaattatatcatccttatgtgtatcatccaatagccccccacaagctggaggttggtaaatgtctaacaagctcaacttggatagaagaagattaaa 20321904  T
Q  202 gggctgaggatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcact 301  Q
     || ||||||||||||| ||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20321905 aggttgaggatgaagagatttggtgaaaaaatcagccacctgctctttagaagaaacaggaagaagcttgagtatgccagaatgtagcttttctctcact 20322004  T
Q  302 atgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagct 401  Q
    ||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||| |    
T  20322005 atgtgacaatcaatttccaagtgtttagtgcgttcatgaaaaacagggttagctgctatatgtagagcactttgattgtcacagaatagtacaggaagtt 20322104  T
Q  402 tgatgcaggtaacatggagatcctgaagaagataaatcaaccatt 446  Q
    |  |||| |||||||||||||| |||||||| |||||||||||||    
T  20322105 tagtgcaagtaacatggagatcttgaagaaggtaaatcaaccatt 20322149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 135 - 360
Target Start/End: Complemental strand, 15451214 - 15450989
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| ||| ||||| || ||||||| |||||||||||||||||| |||| |  |||||| |||||  | |||| ||| |||||||||||    
T  15451214 atagccccccacaagatggtggttgatagatatctatcaagcccagcttggataacagaataccaaagggttgagggaggagaggtttagtgaagaaatc 15451115  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
     || | |   |||||||| || ||||||||||| ||||| ||||||| ||| || || |||||||||||||| |||||||| |||||||| ||||| | |    
T  15451114 tgccaaccaatcttgagatgagacaggaagaagtttgagaatgccagcatgaagcttctctctcactatgtgacaatcaatgtccaagtgcttggttctt 15451015  T
Q  335 tcatgaaaaacagggttagctgctat 360  Q
    ||||||||||| || ||||| |||||    
T  15451014 tcatgaaaaactggattagcagctat 15450989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 20326419 - 20326508
Alignment:
Q  17 tacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaa 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||| |||||||||||||||||||||||    
T  20326419 tacaagatgtttatatacaagagctagcgtacatgataagctatgatagcagagaaacactatagtataactaaaacactctaaactcaa 20326508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 417
Target Start/End: Complemental strand, 9281741 - 9281475
Alignment:
Q  151 tggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagcaacctgttcttga 250  Q
    ||||||||| ||||| | || |||  ||| |||||||||||||| || ||| | |  |||| | | |||||||||||| |||||||| || || |||||     
T  9281741 tggaggttgataaatgtttatcaaatccaacttggataaaagaacatgaaaagtcctaggaagcaaagcttttgtgaaaaaatcagctacttggtcttgt 9281642  T
Q  251 gaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggt 350  Q
    |||||||| ||||| || ||||| |||||||| || || |||||||| |  |  || ||||||||||| || || ||||  |  |||||||||||||| |    
T  9281641 gaagaaactggaagcagtttgagcatgccagattgcagcttttctctaatcagatgacaatcaatctctaattgcttgggcctctcatgaaaaacaggat 9281542  T
Q  351 tagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagcttgatgcaggtaacatg 417  Q
    |||  || ||||||| | | ||||||||||||||  |||| ||||| ||||||  ||||| ||||||    
T  9281541 tagaagcaatatgtatagcactttgattgtcacaatagagcacaggtagcttggagcaggaaacatg 9281475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 345
Target Start/End: Original strand, 30997676 - 30997801
Alignment:
Q  220 ttttgtgaagaaatcagcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctcc 319  Q
    ||||||||||||||||||||  || ||||||||||||||||| | |||||| |  ||||||   || |||||||||||||| |  || ||||||||||||    
T  30997676 ttttgtgaagaaatcagcaatttgatcttgagaagaaacagggataagcttcatgatgccaacttgaagtttttctctcaccagatgacaatcaatctcc 30997775  T
Q  320 aagtgtttggtgcattcatgaaaaac 345  Q
    || || || |||| ||||||||||||    
T  30997776 aaatgctttgtgcgttcatgaaaaac 30997801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 9844876 - 9844971
Alignment:
Q  290 ttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacag 385  Q
    |||||||| || || || ||||| || || |||||||| |||| |||||| || |||||||||||||||||||| | | |||||||||||||||||    
T  9844876 ttttctctaacaatatgacaatctatttctaagtgttttgtgcgttcatggaacacagggttagctgctatatgaagagcgctttgattgtcacag 9844971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 36731139 - 36731214
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgagg 210  Q
    |||||| |||||||| |||||||||||||||||||| ||| |||| ||||||||| |||  || ||| ||||||||    
T  36731139 atagcctcccacaagatggaggttggtaaatatctaccaatcccaacttggataatagagtatgaaaaggctgagg 36731214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 23883276 - 23883329
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggata 188  Q
    |||||| |||||||| |||||||||||| ||||||| ||| |||| ||||||||    
T  23883276 atagcctcccacaaggtggaggttggtagatatctaccaatcccaacttggata 23883329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 5918476 - 5918722
Alignment:
Q  10 atgaagatacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaagtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918476 atgaagatacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaagtt 5918575  T
Q  110 atttcatccttatgtgtatcatccgatagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgag 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5918576 atttcatccttatgtgtatcatccaatagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgag 5918675  T
Q  210 gatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaa 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5918676 gatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaa 5918722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 5922163 - 5922291
Alignment:
Q  10 atgaagatacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaagtt 109  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5922163 atgaagatacaaggtatttatatacaagagctagcgtgcatgataatctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaaatt 5922262  T
Q  110 atttcatccttatgtgtatcatccgatag 138  Q
    |||||||||||||||||||||||| ||||    
T  5922263 atttcatccttatgtgtatcatccaatag 5922291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 14817321 - 14817107
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| ||||| ||| ||||| | || ||| |||| |||||||| |||||  ||||| | || |||| | | ||| || || |||||||||||     
T  14817321 ccccccacaaggtggagattgataaatgtttatcaaacccaacttggatagaagaatgttaaaagtcttaggaagcaaagccttggtaaagaaatcagct 14817222  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||||||||||||||||||| | |||||| || |||   ||||  |||||||| | || ||| || ||||| ||||||||||| ||||  ||||    
T  14817221 acttggtcttgagaagaaacaggaagcaacttgagaatcccactttgtaacttttctctaattaagtgacagtcaatttccaagtgtttagtgcgctcat 14817122  T
Q  339 gaaaaacagggttag 353  Q
    |||||||||||||||    
T  14817121 gaaaaacagggttag 14817107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 399
Target Start/End: Complemental strand, 34069183 - 34069034
Alignment:
Q  250 agaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacaggg 349  Q
    |||||||||||| |||||||| | ||| || |  |||||||||||||| || | ||| || |||||||| | ||| ||||| | ||||||||| || |||    
T  34069183 agaagaaacagggagaagcttcattattcctgcttgtagtttttctctaaccaagtgacagtcaatctcaaggtgcttggttctttcatgaaagactggg 34069084  T
Q  350 ttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaag 399  Q
    |||||||| || |||||  | || || ||||||||| | || ||||||||    
T  34069083 ttagctgcaatgtgtaaggcactctggttgtcacagtaaagcacaggaag 34069034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 45 - 446
Target Start/End: Original strand, 32610395 - 32610817
Alignment:
Q  45 gtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaa--------actcaagttatttcatccttatgtgtatcatccgat 136  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| |||| |         |  ||||||||||||||||||||||||| |||| ||    
T  32610395 gtacatgataagctattgtagtaatgaaacactatagtgcaactaaaa-actcaattacatgagatacaagttatttcatccttatgtgtattatccaat 32610493  T
Q  137 agccccccac--------aagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaa 228  Q
    |||||||| |        ||| ||||||||| || |||||||||||| ||| | ||||||||||||| || || || ||||||||||||||||| |||||    
T  32610494 agccccccccccccccccaagttggaggttgatagatatctaacaagtccaacgtggataaaagaaggttgaaaggttgaggatgaagagctttggtgaa 32610593  T
Q  229 gaaatcagcaacctgttcttg------agaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaag 322  Q
    ||||||| |||| || |||||      ||| |||||| ||||||| ||||||| |||||| ||||| ||||| |||| ||||||||||||||||||||||    
T  32610594 gaaatcaacaacttgctcttgctcttgagaggaaacaagaagaagtttgagtacgccagattgtagcttttccctcaatatgtggcaatcaatctccaag 32610693  T
Q  323 tgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagcttgatgcaggtaacatggagat 422  Q
    |||||||||  ||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||  || |||| | |||| |||| |    
T  32610694 tgtttggtgtgttcatgaaatacagggttagctgctatgtgtaaaacgctttgattgtcacaaaagagtataggaagtctggtgcaagaaacaaggaggt 32610793  T
Q  423 cctgaagaagataaatcaaccatt 446  Q
    |||||||||| ||||||| |||||    
T  32610794 cctgaagaaggtaaatcagccatt 32610817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 135 - 363
Target Start/End: Complemental strand, 52780201 - 52779973
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| ||||||||||||||| | || ||| |||| ||||||||||||||  || || || | |||| | | |||||| || || |||||    
T  52780201 atagccccccacaagatggaggttggtaaatgtttatcaatcccatcttggataaaagaatgttgaaaggtttaggaagcaaagctttagtaaaaaaatc 52780102  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    ||| || || |||||||| ||||| || || |  ||||| ||||| |  ||||  |||||||| ||||| ||||||||||| ||||| |||||||||| |    
T  52780101 agctacttgatcttgagatgaaactgggagcaatttgaggatgcctgcttgtaccttttctctgactatatggcaatcaatttccaaatgtttggtgcgt 52780002  T
Q  335 tcatgaaaaacagggttagctgctatatg 363  Q
    |||||||| || || ||||| ||||||||    
T  52780001 tcatgaaagaccggattagcagctatatg 52779973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 2362080 - 2361866
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| ||||| ||| ||||| | || ||| |||| |||||||| |||||  || || | || |||| | | ||| || || |||||||||||     
T  2362080 ccccccacaaggtggagattgataaatgtttatcaaacccaacttggatagaagaatgttgaaagtcttaggaagcaaagccttggtaaagaaatcagct 2361981  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || ||||||||||||||||| || | |||||| || |||   ||||  |||||||| | || ||| || ||||| ||||||||||| ||||  ||||    
T  2361980 acttggtcttgagaagaaacagggagtaacttgagaatcccactttgtaacttttctctaattaagtgacagtcaatttccaagtgtttagtgcgctcat 2361881  T
Q  339 gaaaaacagggttag 353  Q
    |||||||||||||||    
T  2361880 gaaaaacagggttag 2361866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 40336458 - 40336378
Alignment:
Q  305 tggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacag 385  Q
    |||||||||||||| |||||||| |||| ||||||||| ||||| ||||| |||||||| |   | |||||||||||||||    
T  40336458 tggcaatcaatctctaagtgttttgtgcgttcatgaaacacaggattagcagctatatgaagtgcactttgattgtcacag 40336378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 37736604 - 37736679
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgagg 210  Q
    |||||| |||||||| |||||||||||||||||||| ||| |||| ||||||||| |||  || ||| ||||||||    
T  37736604 atagcctcccacaagatggaggttggtaaatatctaccaatcccaacttggataatagagtatgaaaaggctgagg 37736679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 47705286 - 47705380
Alignment:
Q  290 ttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcaca 384  Q
    |||||||| || ||||| ||||||||||| || || ||||| | ||||||||| || || ||||||| |||||||||| | |||||||| |||||    
T  47705286 ttttctctgacaatgtgacaatcaatctctaaatgcttggttctttcatgaaagactggattagctgatatatgtaaagcactttgattatcaca 47705380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 9801604 - 9801658
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataa 189  Q
    |||||| |||||||| |||||||||||||||||||| ||| || | |||||||||    
T  9801604 atagcctcccacaagttggaggttggtaaatatctaccaatcctaacttggataa 9801658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 52 - 332
Target Start/End: Original strand, 10545464 - 10545734
Alignment:
Q  52 ataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaagttatttcatccttatgtgtatcatccgatagccccccacaagct 151  Q
    ||||||||| || ||||||||||||||| ||  |||||||||||||||||||||| |||       |||| ||  ||||||| ||||||||| |||||||    
T  10545464 ataagctattgtggtaatgaaacactattgtacaactaaaacactctaaactcaa-tta-------cttaggt--atcatccaatagccccctacaagct 10545553  T
Q  152 ggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagcaacctgttcttgag 251  Q
    |||||||| || |||||||||||||||||||| ||||||||||| || || || ||||||||||||||||| |||||||||||| ||||||| |||| ||    
T  10545554 ggaggttgatagatatctaacaagcccagcttagataaaagaaggttgaaaggttgaggatgaagagctttggtgaagaaatcaacaacctgctcttaag 10545653  T
Q  252 aagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgc 332  Q
    |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||| ||||    
T  10545654 aagaaacatgaagaagcttgagtatgccagaatgtagcttttccctcactatgtggaaatcaatttccaagtgtttagtgc 10545734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 135 - 363
Target Start/End: Complemental strand, 12298921 - 12298693
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| ||||||||||||||| | || ||| |||| ||||||||||||||  || || || | |||| | | |||||| || || |||||    
T  12298921 atagccccccacaagatggaggttggtaaatttttatcaatcccatcttggataaaagaatgttgaatggtttaggaagcaaagctttagtaaaaaaatc 12298822  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    ||| || || |||||||| ||||| || || |  ||||| ||||| |  ||||  |||||||| ||||| ||||||||||| ||||| |||||||||| |    
T  12298821 agctacttgatcttgagaggaaactgggagcaatttgaggatgcctgcttgtaccttttctctgactatatggcaatcaatttccaaatgtttggtgcgt 12298722  T
Q  335 tcatgaaaaacagggttagctgctatatg 363  Q
    |||||||| || || ||||| ||||||||    
T  12298721 tcatgaaagaccggattagcagctatatg 12298693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 354
Target Start/End: Original strand, 44666269 - 44666488
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| | |||||||||| | ||||| ||| || | ||||||||||||||   |||| ||||||||| | |  |  || ||||| |||||    
T  44666269 atagccccccacaagttagaggttggtacaaatctagcaaccctaacttggataaaagaatgctaaaaggctgaggaagcaaggacttagtgaaaaaatc 44666368  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    |||||  || ||||||||||||||||| ||||| || |  |||||||  || ||||||||||| ||||  ||||||||||| ||||| || || || | |    
T  44666369 agcaagttgatcttgagaagaaacaggcagaagtttcaaaatgccagcttgaagtttttctctgactagatggcaatcaatttccaaatgcttagtacgt 44666468  T
Q  335 tcatgaaaaacagggttagc 354  Q
    |||||||||| ||| |||||    
T  44666469 tcatgaaaaataggattagc 44666488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 348
Target Start/End: Complemental strand, 8838551 - 8838342
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| |||||| ||||||||||||||||  |||| |||||| |  |  ||  ||||||| ||||| |  | ||| ||||| ||||||||||||    
T  8838551 ccccccacaagttggagggtggtaaatatctaacatccccaacttggaaagcaagaggctaaagggttgaggctataaagcctttgtaaagaaatcagca 8838452  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    |  || || ||||  | ||| |||||||| ||||  ||||| |  ||||| ||||| ||||| ||||| ||||||||||| |  |||||||| | |||||    
T  8838451 atttgatcatgagtggtaactggaagaagtttgaagatgcctgcttgtagcttttccctcacaatgtgacaatcaatctcaagatgtttggttctttcat 8838352  T
Q  339 gaaaaacagg 348  Q
    ||||||||||    
T  8838351 gaaaaacagg 8838342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 363
Target Start/End: Original strand, 19584470 - 19584698
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||| ||| ||||||||||||||| | || ||| |||| |||||| |||||||  || || || | |||| | | | |||| ||||| |||||    
T  19584470 atagccccccagaagatggaggttggtaaatgtttatcaatcccatcttggacaaaagaatgttgaatggtttaggaagcaaacctttagtgaaaaaatc 19584569  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
     |  || || |||||||| ||||| || || |  ||||| ||||| |  || |  |||||||| ||||| ||||||||||| ||||| |||||||||| |    
T  19584570 tgttacttgatcttgagaggaaactgggagcaatttgaggatgcctgcttgaaccttttctctgactatatggcaatcaatttccaaatgtttggtgcgt 19584669  T
Q  335 tcatgaaaaacagggttagctgctatatg 363  Q
    |||||||| || || ||||| ||||||||    
T  19584670 tcatgaaagaccggattagcagctatatg 19584698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 5686772 - 5686855
Alignment:
Q  176 cccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaaaca 259  Q
    |||| ||| ||||| || ||||| || || ||||||||||||||||||||||||||||  || | ||| |||||||||| ||||    
T  5686772 cccaacttagataataggagattgaaaggttgaggatgaagagcttttgtgaagaaattggccagctgatcttgagaagtaaca 5686855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 318
Target Start/End: Original strand, 5665331 - 5665473
Alignment:
Q  176 cccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaaacaggaagaagcttgagta 275  Q
    |||| ||| ||||| || ||||| || || ||||||||||||||||||||||||||||  || |  || |||||||||| |||| |||  || ||||| |    
T  5665331 cccaacttagataataggagattgaaaggttgaggatgaagagcttttgtgaagaaattggccagttgatcttgagaagtaacaagaaagagtttgagaa 5665430  T
Q  276 tgccagaatgtagtttttctctcactatgtggcaatcaatctc 318  Q
    |||| |  || || || ||||| ||||||||| | ||||||||    
T  5665431 tgcctggctgaagcttctctctgactatgtggtagtcaatctc 5665473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 10560346 - 10560392
Alignment:
Q  328 ggtgcattcatgaaaaacagggttagctgctatatgtaaaccgcttt 374  Q
    ||||| ||||||||| ||| |||||||||||||||||||| ||||||    
T  10560346 ggtgcgttcatgaaatacatggttagctgctatatgtaaagcgcttt 10560392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 18962714 - 18962782
Alignment:
Q  337 atgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagcttgat 405  Q
    |||||| ||||||||||| ||||| |||||| | || |||||||||||  | || ||||||||||||||    
T  18962714 atgaaatacagggttagcagctatgtgtaaagcactctgattgtcacaataaaggacaggaagcttgat 18962782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 135 - 363
Target Start/End: Complemental strand, 13530 - 13302
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| ||||||||||||||| | || ||| |||| ||||||||||||||  || || || | |||| | | |||||| || || |||||    
T  13530 atagccccccacaagatggaggttggtaaatgtttatcaatcccatcttggataaaagaatgttgaatggtttaggaagcaaagctttagtaaaaaaatc 13431  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    ||| || || |||||||| ||||| || || |  ||||| ||||| |  ||||  |||||||| ||||| ||||||||||| ||||| |||||||||| |    
T  13430 agctacttgatcttgagatgaaactgggagcaatttgaggatgcctgcttgtaccttttctctgactatatggcaatcaatttccaaatgtttggtgcgt 13331  T
Q  335 tcatgaaaaacagggttagctgctatatg 363  Q
    |||||||| || || ||||| ||||||||    
T  13330 tcatgaaagaccggattagcagctatatg 13302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 351
Target Start/End: Complemental strand, 22645883 - 22645667
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| |||| |||| ||||| |||| |||||||| |||||||||||| |||  ||| |  |  ||| ||||||||||||||||||||||    
T  22645883 atagccccccacaagttggacgttgataaatgtctatcaagcccaacttggataaaagcagagaaaatgttttgggaagaagagcttttgtgaagaaatc 22645784  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    |||||  || |||||||||||||| || ||||| || || |  ||||  || | ||||||||| || || || || ||||||||||| |||||||| |      
T  22645783 agcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctc 22645684  T
Q  335 tcatgaaaaacagggtt 351  Q
    ||||| || ||||||||    
T  22645683 tcatggaagacagggtt 22645667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 10869405 - 10869191
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| ||||| ||| ||||| | || ||| |||| |||||||| ||||| |||||||| || |||| | | ||| || || || ||||||||     
T  10869405 ccccccacaaggtggagattgataaatgtttatcaaacccaacttggatagaagaatattaaaggtcttaggaagcaaagccttggtaaaaaaatcagct 10869306  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||||||||||||||||||| | |||||| || |||   ||||  |||||||| | || ||| || ||||| ||||||||||| ||||  ||||    
T  10869305 acttgatcttgagaagaaacaggaagcaacttgagaatcccactttgtaacttttctctgattaagtgacagtcaatttccaagtgtttagtgcgctcat 10869206  T
Q  339 gaaaaacagggttag 353  Q
    |||||||||||||||    
T  10869205 gaaaaacagggttag 10869191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 10655260 - 10655046
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| ||||| ||| ||||| | || ||| |||| |||||||| ||||| |||||||| || |||| | | ||| || || || ||||||||     
T  10655260 ccccccacaaggtggagattgataaatgtttatcaaacccaacttggatagaagaatattaaaggtcttaggaagcaaagccttggtaaaaaaatcagct 10655161  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||||||||||||||||||| | |||||| || |||   ||||  |||||||| | || ||| || ||||| ||||||||||| ||||  ||||    
T  10655160 acttgatcttgagaagaaacaggaagcaacttgagaatcccactttgtaacttttctctgattaagtgacagtcaatttccaagtgtttagtgcgctcat 10655061  T
Q  339 gaaaaacagggttag 353  Q
    |||| ||||||||||    
T  10655060 gaaagacagggttag 10655046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 5241863 - 5241649
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||| ||| ||||| ||| ||||| | || ||| |||| |||||||| |||||  ||||| | || |||| | | ||| || || |||||||||||     
T  5241863 ccccccataaggtggagattgataaatgtttatcaaacccaacttggatagaagaatgttaaaagtcttaggaagcaaagccttggtaaagaaatcagct 5241764  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||||||||||||||||||| | ||||||  | |||   ||||  |||||||| | || ||| || ||||| ||||||||||| ||||  ||||    
T  5241763 acttggtcttgagaagaaacaggaagcaacttgagagtcccactttgtaacttttctctaattaagtgacagtcaatttccaagtgtttagtgcgctcat 5241664  T
Q  339 gaaaaacagggttag 353  Q
    |||||||||||||||    
T  5241663 gaaaaacagggttag 5241649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 23165215 - 23165339
Alignment:
Q  134 gatagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaat 233  Q
    |||| ||||||||||| ||||||||||||||| | || ||| || | ||||||||| || | ||| || |||| |||| | |  ||||||||||||||||    
T  23165215 gatatccccccacaagttggaggttggtaaatgtttatcaaccctaacttggataagaggatattgaaaggcttaggaagcaatgcttttgtgaagaaat 23165314  T
Q  234 cagcaacctgttcttgagaagaaac 258  Q
    |||| || || ||||| ||||||||    
T  23165315 cagccacttgatcttgtgaagaaac 23165339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 14041342 - 14041280
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaa 201  Q
    ||||||||||| |||||||||||| || |||||||| |||| |||||| |  |||||||||||    
T  14041342 ccccccacaagatggaggttggtagatgtctaacaatcccaacttggaaagtagaagattaaa 14041280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 19799186 - 19799236
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataa 189  Q
    |||||| |||| |||||||||||| ||||||||||| |||| |||||||||    
T  19799186 ccccccgcaagttggaggttggtatatatctaacaaccccaacttggataa 19799236  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 139 - 354
Target Start/End: Complemental strand, 19996681 - 19996466
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| |||||| ||||| ||||||||||  |||| |||||||| ||| | ||| || || |||||| | |  | |||||| || ||||| ||     
T  19996681 ccccccacaagttggagggtggtatatatctaacatccccaacttggatagaagtaaattgaatggttgaggaagcaatgattttgtaaaaaaatctgct 19996582  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||| |||||||| ||||||||| ||||  | | |||  | |||||| || || ||||||||||| || || || | ||||||||||| |||||    
T  19996581 acttgatctttagaagaaataggaagaagtttgaacaagacagtctatagtttctccctgactatgtggcagtctatttcaaggtgtttggtgcgttcat 19996482  T
Q  339 gaaaaacagggttagc 354  Q
    |||| |||||||||||    
T  19996481 gaaagacagggttagc 19996466  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 267
Target Start/End: Original strand, 15885162 - 15885293
Alignment:
Q  136 tagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatca 235  Q
    |||||||||||||| | |||||||||| | ||||||||| || | |||||||||||||| ||| ||||| |||||| | |  |  || ||||||||||||    
T  15885162 tagccccccacaagttagaggttggtacaaatctaacaaccctaacttggataaaagaatattgaagggttgaggaagcaatgacttagtgaagaaatca 15885261  T
Q  236 gcaacctgttcttgagaagaaacaggaagaag 267  Q
    ||||  || || | |||||||||||| |||||    
T  15885262 gcaagttggtcctaagaagaaacaggcagaag 15885293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 354
Target Start/End: Complemental strand, 15760845 - 15760630
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| | |||| ||||| ||||||||||  |||| |||||||| |||  ||||||| || |||||| | |  | ||||||||| ||||| ||     
T  15760845 ccccccacaagttcgaggatggtagatatctaacattcccaacttggatagaagcggattaaaaggttgaggaagtaaggattttgtgaaaaaatctgcc 15760746  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||| |||||||| ||| ||||| ||||  |  ||||  || | ||| ||||| ||||| || || |||||||| |  ||||||||||||||||    
T  15760745 acttgatctttagaagaaatagggagaagtttgaacaaaccagcttgcaatttctctctgactatatgacagtcaatctcaagatgtttggtgcattcat 15760646  T
Q  339 gaaaaacagggttagc 354  Q
    | || ||||| |||||    
T  15760645 ggaagacaggattagc 15760630  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 614516 - 614302
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| ||||||||| ||||| | || ||| |||| ||||||||  || | |||||| | || |||| | | ||| || ||||| | ||||||     
T  614516 ccccccacaagatggaggttgataaatgtttatcaaacccaacttggataggagtacattaaaagtcttaggaagcaaagccttggtgaaaatatcagct 614417  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || ||  |||| |||||||||||||| | |||||| || |||   ||||| |||||| | |  | ||| || ||||| ||||||||||||||||  ||||    
T  614416 acttgagcttgggaagaaacaggaagcaacttgagaataccattttgtagcttttctttgatcaagtgacagtcaatttccaagtgtttggtgcgctcat 614317  T
Q  339 gaaaaacagggttag 353  Q
    |||| | ||||||||    
T  614316 gaaagatagggttag 614302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 18550377 - 18550431
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataa 189  Q
    |||||| || ||||| |||||||||||||||||||| ||| |||| |||||||||    
T  18550377 atagcctcctacaagttggaggttggtaaatatctaccaatcccaacttggataa 18550431  T

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Target: scaffold0655 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 21 - 86
Alignment:
Q  320 aagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacag 385  Q
    |||||||| |||| |||||| || |||||||||||||||||||| | | |||||||||||||||||    
T  21 aagtgttttgtgcgttcatggaacacagggttagctgctatatgaagagcgctttgattgtcacag 86  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 19913978 - 19914045
Alignment:
Q  140 cccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctg 207  Q
    |||||||||| |||||||||||| ||||| ||||| |||| ||||||||| | ||||||||| |||||    
T  19913978 cccccacaagttggaggttggtatatatccaacaaccccaacttggataacaaaagattaaaaggctg 19914045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 23683135 - 23683060
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgagg 210  Q
    |||||| |||||||| |||||||||||||||||||| ||| |||| ||||||||| |||  || ||| ||||||||    
T  23683135 atagcctcccacaagatggaggttggtaaatatctaccaatcccaacttggataatagagtatgaaaaggctgagg 23683060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 28154382 - 28154425
Alignment:
Q  305 tggcaatcaatctccaagtgtttggtgcattcatgaaaaacagg 348  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||    
T  28154382 tggcaatcaatctctaagtgtttggtgcgttcatgaaacacagg 28154425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 13486828 - 13486893
Alignment:
Q  142 cccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctg 207  Q
    |||||||| |||||||||||| ||||| ||||  |||| |||||||| ||||||||| || |||||    
T  13486828 cccacaagttggaggttggtagatatccaacatccccaacttggatagaagaagattgaaaggctg 13486893  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 38845207 - 38845301
Alignment:
Q  290 ttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcaca 384  Q
    |||||||| || ||||| ||||||||||| || || ||||| | ||||||||| || || ||||||| |||||||||| | |||||||| |||||    
T  38845207 ttttctctgacaatgtgacaatcaatctctaaatgcttggttctttcatgaaagactggattagctgatatatgtaaagcactttgattatcaca 38845301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 385
Target Start/End: Complemental strand, 8854751 - 8854506
Alignment:
Q  140 cccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagcaa 239  Q
    |||||||||||||||   ||||||||||||||||   | |||||| |||||||||  || ||||| |||||| |||||| ||| || ||||| || ||||    
T  8854751 cccccacaagctggaaaatggtaaatatctaacatttcgagcttgaataaaagaatgttgaagggttgaggaagaagaggtttagtaaagaagtctgcaa 8854652  T
Q  240 cctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatg 339  Q
     ||| ||    ||||| |||||||||||||| |  ||| | |  ||||| |||||||| || | ||  ||||||||||| | ||| ||||| | ||||||    
T  8854651 gctggtcagaggaagagacaggaagaagcttcatgatgtctgcttgtagcttttctctaaccaagtaacaatcaatctcaaggtgcttggttctttcatg 8854552  T
Q  340 aaaaacagggttagctgctatatgtaaaccgctttgattgtcacag 385  Q
     |||||  |||| ||||| || |||||| | ||||| || ||||||    
T  8854551 gaaaactaggttggctgcaatgtgtaaagcactttggttatcacag 8854506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 27300 - 27086
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggctgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| ||||||||| ||||| | || ||| |||| ||||||||  || | |||||| | || |||| | | ||| || ||||| | ||||||     
T  27300 ccccccacaagatggaggttgataaatgtttatcaaacccaacttggataggagtacattaaaagtcttaggaagcaaagccttggtgaaaatatcagct 27201  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || ||  |||| |||||||||||||| | |||||| || |||   ||||| |||||| | |  | ||| || ||||| ||||||||||||||||  ||||    
T  27200 acttgagcttgggaagaaacaggaagcaacttgagaataccattttgtagcttttctttgatcaagtgacagtcaatttccaagtgtttggtgcgctcat 27101  T
Q  339 gaaaaacagggttag 353  Q
    |||| | ||||||||    
T  27100 gaaagatagggttag 27086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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