View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0206Eco1 (Length: 289)

Name: NF0206Eco1
Description: NF0206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0206Eco1
NF0206Eco1
[»] chr2 (8 HSPs)
chr2 (9-286)||(35018223-35018500)
chr2 (9-283)||(35011197-35011471)
chr2 (12-283)||(34997802-34998068)
chr2 (25-286)||(35027151-35027412)
chr2 (9-283)||(35034163-35034437)
chr2 (25-245)||(35029987-35030206)
chr2 (27-106)||(35035787-35035866)
chr2 (27-102)||(36289621-36289696)
[»] chr8 (1 HSPs)
chr8 (9-103)||(2450309-2450402)
[»] chr4 (1 HSPs)
chr4 (237-286)||(30611630-30611679)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 35018223 - 35018500
Alignment:
Q  9 tttgctcttacttcatttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttcacctc 108  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35018223 tttgctcttacttcttttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttcacctc 35018322  T
Q  109 tctcaacttctataccaaccttcaacgtactactcatcattcttgcattcatgatatgatccgcacctgcacgtggcaacagaaccaactgacacgtgtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35018323 tctcaacttctataccaaccttcaacgtactactcatcattcttgcattcatgatatgatccgcacctgcacgtggcaacagaaccaactgacacgtgtt 35018422  T
Q  209 aacaagtccttcggttatactagcagctccacagtgtgttatgaaacatccaacagaaggatgttctaaaatcaattg 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35018423 aacaagtccttcggttatactagcagctccacagtgtgttatgaaacatccaacagatggatgttctaaaatcaattg 35018500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 35011197 - 35011471
Alignment:
Q  9 tttgctcttacttcatttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttcacctc 108  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||||  ||||||| ||||  ||||||||||||||||||||||||||||||||||||     
T  35011197 tttgctcttactgcttttccaacctcgttctcatcatccatcacaatcttcacagctttgcacacactttcttttgtaaacaacccatcttcttcacctt 35011296  T
Q  109 tctcaacttctataccaaccttcaacgtactactcatcattcttgcattcatgatatgatccgcacctgcacgtggcaacagaaccaactgacacgtgtt 208  Q
    |||||||||| | ||||||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  35011297 tctcaacttccacaccaacctttaacttactactcatcattcttgcattcatgatatgatcagtacctgcacgtggcaacagcaccaactgacacgtgtt 35011396  T
Q  209 aacaagtccttcggttatactagcagctccacagtgtgttatgaaacatccaacagaaggatgttctaaaatcaa 283  Q
    ||||||||| || || |||  |||||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  35011397 aacaagtccctcagtaatagaagcagctccacagtgtgttatgaaacatcctacagaagggtgttctagaatcaa 35011471  T

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Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 34997802 - 34998068
Alignment:
Q  12 gctcttacttcatttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttcacctctct 111  Q
    ||||| |||||  |||||||||||||||||||||||||||||||  ||||||| ||||  ||||||||||| ||||||||||||||||| |||||| |||    
T  34997802 gctctcacttcccttccaacctcattctcatcatccatcacaatcttcacagctttgcacacactttctttcgtaaacaacccatcttcatcacctttct 34997901  T
Q  112 caacttctataccaaccttcaacgtactactcatcattcttgcattcatgatatgatccgcacctgcacgtggcaacagaaccaactgacacgtgttaac 211  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| | | |  |||||||||| |  |||||||||||| |||||||    
T  34997902 caacttttataccaaccttcaacttattactcatcattcttgcattcatgatatgatcaggatccacacgtggcaagaacaccaactgacacatgttaac 34998001  T
Q  212 aagtccttcggttatactagcagctccacagtgtgttatgaaacatccaacagaaggatgttctaaaatcaa 283  Q
    |||||||||     ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34998002 aagtccttc-----tagaagcagctccacagtgtgttatgaaacatccaacagaaggatgttctaaaatcaa 34998068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 25 - 286
Target Start/End: Complemental strand, 35027412 - 35027151
Alignment:
Q  25 ttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttcacctctctcaacttctatacc 124  Q
    ||||||| | |||||||||||||||||||||| ||||||| |  |  ||||||||||||||||||||||||||||| |||||| |||||||||| | |||    
T  35027412 ttccaactttattctcatcatccatcacaattttcacagcttcacacacactttcttttgtaaacaacccatcttcatcacctttctcaacttccacacc 35027313  T
Q  125 aaccttcaacgtactactcatcattcttgcattcatgatatgatccgcacctgcacgtggcaacagaaccaactgacacgtgttaacaagtccttcggtt 224  Q
    |||||||| | |   ||||||||||||||||||||||||||||||  | ||| |||||||||||| ||||||||||||||||||||| ||| | ||||||    
T  35027312 aaccttcatcttttcactcatcattcttgcattcatgatatgatcaacgcctacacgtggcaacaaaaccaactgacacgtgttaacgagtgcctcggtt 35027213  T
Q  225 atactagcagctccacagtgtgttatgaaacatccaacagaaggatgttctaaaatcaattg 286  Q
    |||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  35027212 atagaagcagctccacagtgtgttatgaaacatccaacagaagggtgttctagaatcaattg 35027151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 35034437 - 35034163
Alignment:
Q  9 tttgctcttacttcatttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttcacctc 108  Q
    |||||||| |||||  |||||| ||||||||| |||||||| |||||| |  |||| ||||  ||||||||||||||||||||||||||||| ||||||     
T  35034437 tttgctctcacttctcttccaatctcattctcgtcatccattacaatttttgcagctttgcacacactttcttttgtaaacaacccatcttcatcacctt 35034338  T
Q  109 tctcaacttctataccaaccttcaacgtactactcatcattcttgcattcatgatatgatccgcacctgcacgtggcaacagaaccaactgacacgtgtt 208  Q
    |||||||||| | ||||||||| ||  |   |||||||| ||||||||||||||||||||| | |||   |||||||||||  |||| ||||||||| ||    
T  35034337 tctcaacttccacaccaaccttaaattttgaactcatcactcttgcattcatgatatgatcggaaccaagacgtggcaacaacaccagctgacacgtatt 35034238  T
Q  209 aacaagtccttcggttatactagcagctccacagtgtgttatgaaacatccaacagaaggatgttctaaaatcaa 283  Q
    ||||||||| ||||||||   |||||||||||| |||||||||||||||||||| ||||| ||||| | ||||||    
T  35034237 aacaagtccctcggttattgaagcagctccacaatgtgttatgaaacatccaacggaagggtgttccagaatcaa 35034163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 35030206 - 35029987
Alignment:
Q  25 ttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttcacctctctcaacttctatacc 124  Q
    |||||||||||||| | |||| |||||||||  ||||||| ||||  ||| ||||||||||||||||||||||||| |||||| |||||||||| | |||    
T  35030206 ttccaacctcattcccttcatgcatcacaatcttcacagctttgcacacattttcttttgtaaacaacccatcttcatcacctttctcaacttccacacc 35030107  T
Q  125 aaccttcaacgtactactcatcattcttgcattcatgatatgatccgcacctgcacgtggcaacagaaccaactgacacgtgttaacaagtccttcggtt 224  Q
    ||| || ||| |  ||||||||||||||||||| ||||||||||| | || | |||||||||| |  |||||||| ||| || ||||||||||||| |||    
T  35030106 aactttaaactttttactcatcattcttgcattaatgatatgatcagaacttacacgtggcaagaacaccaactggcacttgctaacaagtccttcagtt 35030007  T
Q  225 atactagcagctccacagtgt 245  Q
    ||   ||||||||||||||||    
T  35030006 at-gaagcagctccacagtgt 35029987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 35035787 - 35035866
Alignment:
Q  27 ccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttcacc 106  Q
    |||| |||||||||||||||||| |||||| ||||||| |  |  |||||||| || || ||||| ||||||||||||||    
T  35035787 ccaatctcattctcatcatccataacaattttcacagcttcacaaacactttccttagtgaacaatccatcttcttcacc 35035866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 36289696 - 36289621
Alignment:
Q  27 ccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttctt 102  Q
    |||| ||||||||||||||||||||||||| ||||||| |  |  |||||||| || || ||||| ||||||||||    
T  36289696 ccaatctcattctcatcatccatcacaattttcacagcttcacaaacactttccttagtgaacaatccatcttctt 36289621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 2450309 - 2450402
Alignment:
Q  9 tttgctcttacttcatttccaacctcattctcatcatccatcacaattctcacagcgttgcctacactttcttttgtaaacaacccatcttcttc 103  Q
    |||| ||| ||||| |||||||| ||||||   ||||||||||||||| ||||||| ||| |||||||||| ||||| ||||| |||| ||||||    
T  2450309 tttgttctcacttcttttccaacttcattcctttcatccatcacaattttcacagctttgtctacactttc-tttgtgaacaagccatattcttc 2450402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 30611630 - 30611679
Alignment:
Q  237 ccacagtgtgttatgaaacatccaacagaaggatgttctaaaatcaattg 286  Q
    ||||| ||||| ||||||||||| |||||||||||||| |||||||||||    
T  30611630 ccacaatgtgtaatgaaacatcccacagaaggatgttccaaaatcaattg 30611679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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