View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0206Eco7 (Length: 214)
Name: NF0206Eco7
Description: NF0206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0206Eco7 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 1888302 - 1888517
Alignment:
| Q |
10 |
agccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttttgaattggatt |
109 |
Q |
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| T |
1888302 |
agccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttttgaattggatt |
1888401 |
T |
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| Q |
110 |
cttggcattgttcttgctaattt-------------ttaatgatatggttgttgataatcattaatttgtgcatttctttctatagtataattggagcct |
196 |
Q |
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| T |
1888402 |
cttggcattgttcttgctaatttttattgttccaacttaatgacatggttgttgagaatcattaatttgtgcatttctttctatagtataattggagcct |
1888501 |
T |
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| Q |
197 |
taatcatcttaattgg |
212 |
Q |
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||||||||| |||||| |
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| T |
1888502 |
taatcatctcaattgg |
1888517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 1898864 - 1898969
Alignment:
| Q |
10 |
agccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttttgaattggatt |
109 |
Q |
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| T |
1898864 |
agccacttcaaattgttatttctgctggcttaggtgttatgtttcttggtgatactcttcatgttggaaggtatagtaaattcaatttttgcatttgatt |
1898963 |
T |
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| Q |
110 |
cttggc |
115 |
Q |
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|||||| |
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| T |
1898964 |
cttggc |
1898969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 1881002 - 1881090
Alignment:
| Q |
10 |
agccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttt |
98 |
Q |
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| T |
1881002 |
agccactccaaattgtgttttctgttgccttggctgttatattccttggtgatactcttcatgttggaaggtatggtttattcaatttt |
1881090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 1904069 - 1904158
Alignment:
| Q |
10 |
agccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattttt |
99 |
Q |
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| T |
1904069 |
agccacttcaaattgttatttctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttt |
1904158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 1908302 - 1908391
Alignment:
| Q |
10 |
agccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattttt |
99 |
Q |
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| T |
1908302 |
agccacttcaaattgttatttctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttt |
1908391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 1914182 - 1914270
Alignment:
| Q |
10 |
agccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttt |
98 |
Q |
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| T |
1914182 |
agccactgcaaattgttatctctgtttggttgggagttatattccttggtgatactcttcatcttggaaggtatggttaattcaatttt |
1914270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 1893160 - 1893239
Alignment:
| Q |
18 |
caaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattt |
97 |
Q |
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| T |
1893160 |
caaattgttatttctgttggcttaggagttatattccttggtgatattcttcatattggaaggtatggttaatttaattt |
1893239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 1881369 - 1881414
Alignment:
| Q |
90 |
ttcaatttttgaattggattcttggcattgttcttgctaattttta |
135 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
1881369 |
ttcaatatttgaattggatttttggcattgttcttgctaattttta |
1881414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 1881428 - 1881474
Alignment:
| Q |
133 |
ttaatgatatggttgttgataatcattaatttgtgcatttctttcta |
179 |
Q |
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| T |
1881428 |
ttaatcatatggttgttgacaatcattaatttgtgtatttctttcta |
1881474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 1919178 - 1919239
Alignment:
| Q |
20 |
aattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggt |
81 |
Q |
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| T |
1919178 |
aattgttattgctgttgctatgggtattttgttccttggtgatactcttcatattggaaggt |
1919239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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