View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0206Eco9 (Length: 115)
Name: NF0206Eco9
Description: NF0206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0206Eco9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 100; Significance: 6e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 6e-50
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 31057798 - 31057900
Alignment:
| Q |
10 |
tcagacctttataatatctaacaataatatttctggtgttataccattagattttattggtttanccaagctgggcgtgcttcatctttcttcaaatcaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31057798 |
tcagacctttataatatctaacaataatatttctggtgttataccattagattttattggtttaaccaagctgggcgtgcttcatctttcttcaaatcaa |
31057897 |
T |
|
| Q |
110 |
ttg |
112 |
Q |
| |
|
||| |
|
|
| T |
31057898 |
ttg |
31057900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 31102237 - 31102335
Alignment:
| Q |
14 |
acctttataatatctaacaataatatttctggtgttataccattagattttattggtttanccaagctgggcgtgcttcatctttcttcaaatcaattg |
112 |
Q |
| |
|
||||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
31102237 |
accttcatgatatctaacactaatatttctggtggtataccattagattttattggtttaaccaagctaggtaggcttcatctttcttcaaatcaattg |
31102335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 31139623 - 31139711
Alignment:
| Q |
23 |
atatctaacaataatatttctggtgttataccattagattttattggtttanccaagctgggcgtgcttcatctttcttcaaatcaatt |
111 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
31139623 |
atatccaacaataatatttctggggttataccattagaacttattggtttaaccaagctaggtaggcttcatctttcttcaaatcaatt |
31139711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 31183338 - 31183427
Alignment:
| Q |
23 |
atatctaacaataatatttctggtgttataccattagattttattggtttanccaagctgggcgtgcttcatctttcttcaaatcaattg |
112 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||| | |||| ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
31183338 |
atatccaacaataatatttctggtgctataccattagaacttactcgtttgaccaagctaggtaggcttcatctttcttcaaatcaattg |
31183427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1282 times since January 2019
Visitors: 2391